Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   AAEU35_RS05245 Genome accession   NZ_CP152294
Coordinates   1083266..1084078 (+) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain Q13     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1078266..1089078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEU35_RS05220 yaaT 1078321..1079103 (-) 783 WP_023188991.1 stage 0 sporulation family protein Regulator
  AAEU35_RS05225 - 1079155..1080015 (-) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  AAEU35_RS05230 tmk 1080148..1080783 (-) 636 WP_012897230.1 dTMP kinase -
  AAEU35_RS05235 yycF 1080961..1081662 (+) 702 WP_003131580.1 response regulator YycF -
  AAEU35_RS05240 vicK 1081655..1083097 (+) 1443 WP_012897229.1 cell wall metabolism sensor histidine kinase WalK Regulator
  AAEU35_RS05245 vicX 1083266..1084078 (+) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  AAEU35_RS05250 groL 1084123..1085751 (-) 1629 WP_003131585.1 chaperonin GroEL -
  AAEU35_RS05255 groES 1085840..1086124 (-) 285 WP_003131589.1 co-chaperone GroES -
  AAEU35_RS05260 - 1086244..1086633 (-) 390 WP_010905314.1 single-stranded DNA-binding protein -
  AAEU35_RS05265 - 1086722..1088062 (-) 1341 WP_058223348.1 FAD-dependent oxidoreductase -
  AAEU35_RS05270 ytpR 1088225..1088851 (-) 627 WP_003131594.1 YtpR family tRNA-binding protein -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=891805 AAEU35_RS05245 WP_003131583.1 1083266..1084078(+) (vicX) [Lactococcus lactis strain Q13]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=891805 AAEU35_RS05245 WP_003131583.1 1083266..1084078(+) (vicX) [Lactococcus lactis strain Q13]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCCTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685