Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   RY930_RS20995 Genome accession   NZ_CP136589
Coordinates   4515966..4517405 (-) Length   479 a.a.
NCBI ID   WP_317114200.1    Uniprot ID   -
Organism   Aeromonas veronii strain BIM B-1812     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4510966..4522405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RY930_RS20965 (RY930_20965) - 4511234..4511974 (+) 741 WP_317114199.1 KDGP aldolase family protein -
  RY930_RS20970 (RY930_20970) - 4512082..4513986 (+) 1905 WP_139732709.1 transcription antiterminator -
  RY930_RS20975 (RY930_20975) npr 4514004..4514276 (-) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  RY930_RS20980 (RY930_20980) rapZ 4514297..4515163 (-) 867 WP_236295907.1 RNase adapter RapZ -
  RY930_RS20985 (RY930_20985) ptsN 4515209..4515655 (-) 447 WP_005336322.1 PTS IIA-like nitrogen regulatory protein PtsN -
  RY930_RS20990 (RY930_20990) hpf 4515658..4515945 (-) 288 WP_005336323.1 ribosome hibernation promoting factor -
  RY930_RS20995 (RY930_20995) rpoN/rpoN1 4515966..4517405 (-) 1440 WP_317114200.1 RNA polymerase factor sigma-54 Machinery gene
  RY930_RS21000 (RY930_21000) lptB 4517471..4518196 (-) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  RY930_RS21005 (RY930_21005) lptA 4518200..4518727 (-) 528 WP_317115289.1 lipopolysaccharide transport periplasmic protein LptA -
  RY930_RS21010 (RY930_21010) lptC 4518714..4519274 (-) 561 WP_317114201.1 LPS export ABC transporter periplasmic protein LptC -
  RY930_RS21015 (RY930_21015) kdsC 4519271..4519825 (-) 555 WP_317114202.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  RY930_RS21020 (RY930_21020) - 4519825..4520820 (-) 996 WP_005336342.1 KpsF/GutQ family sugar-phosphate isomerase -
  RY930_RS21025 (RY930_21025) mlaF 4521028..4521828 (+) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53687.61 Da        Isoelectric Point: 4.3416

>NTDB_id=891804 RY930_RS20995 WP_317114200.1 4515966..4517405(-) (rpoN/rpoN1) [Aeromonas veronii strain BIM B-1812]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMDLLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=891804 RY930_RS20995 WP_317114200.1 4515966..4517405(-) (rpoN/rpoN1) [Aeromonas veronii strain BIM B-1812]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCCCAAGAGCAGATGCCG
GATGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGGCTCACACCGTTCA
GTGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCAGTCACCAGCGATGACGTAGAGGTGGAACTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGATCTGCTCGGCAATCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGCCCCGGCAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGTAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATTCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGTCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.793

100

0.489