Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RZV15_RS16260 Genome accession   NZ_CP136577
Coordinates   3830401..3831795 (+) Length   464 a.a.
NCBI ID   WP_355505398.1    Uniprot ID   -
Organism   Xanthomonas cannabis strain DAR82752     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3825401..3836795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RZV15_RS16245 (RZV15_16190) sucD 3825962..3826837 (-) 876 WP_005921370.1 succinate--CoA ligase subunit alpha -
  RZV15_RS16250 (RZV15_16195) sucC 3826862..3828031 (-) 1170 WP_039405518.1 ADP-forming succinate--CoA ligase subunit beta -
  RZV15_RS16255 (RZV15_16200) - 3828263..3829876 (+) 1614 WP_039405515.1 HAMP domain-containing sensor histidine kinase -
  RZV15_RS16260 (RZV15_16205) pilR 3830401..3831795 (+) 1395 WP_355505398.1 sigma-54 dependent transcriptional regulator Regulator
  RZV15_RS16265 (RZV15_16210) pilB 3832467..3834203 (-) 1737 WP_355581793.1 type IV-A pilus assembly ATPase PilB Machinery gene
  RZV15_RS16270 (RZV15_16215) - 3834353..3834955 (-) 603 WP_355581796.1 methionine biosynthesis protein MetW -
  RZV15_RS16275 (RZV15_16220) - 3834948..3835994 (-) 1047 WP_355581798.1 glycosyltransferase family 2 protein -
  RZV15_RS16280 (RZV15_16225) - 3835991..3836785 (-) 795 WP_355581801.1 glycosyltransferase -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 50157.55 Da        Isoelectric Point: 6.5721

>NTDB_id=891654 RZV15_RS16260 WP_355505398.1 3830401..3831795(+) (pilR) [Xanthomonas cannabis strain DAR82752]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIARRHPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIGVLRGLVKHALELNNRDRPAPPPPPPEQASRLLGDSTAMESLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASGETLVDVRILSATHKDLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTPSALDALDQYGFPGNVRELENILERALALAEDDQISASDLRLPAHGGHRLAAAPGSAA
VEPREAVHDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=891654 RZV15_RS16260 WP_355505398.1 3830401..3831795(+) (pilR) [Xanthomonas cannabis strain DAR82752]
ATGAACGAACCCAAAAGCGCCCTGGTTGTCGATGACGAGCGAGATATCCGCGAGTTGCTTGTTCTCACCCTGGGCCGTAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGTTACTGGCCAACAACCCGTACGACCTGTGCCTGA
CCGACATGCGGTTGCCGGACGGCAACGGCATCGAACTGGTCACCGAAATCGCCAGGCGCCACCCGCAGACCCCGGTGGCG
ATGATCACCGCCTTCGGCAGCATGGACCTGGCCGTGGAAGCGCTGAAGGCCGGCGCCTTCGACTTCGTGAGCAAGCCGGT
GGACATCGGCGTGTTGCGTGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCGGCCCCGCCACCGCCGC
CACCGGAACAGGCCAGCCGCTTGCTGGGCGATTCGACCGCGATGGAAAGCCTGCGCGCCACCATCGGCAAGGTGGCGCGC
AGCCAGGCGCCGGTCTATATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTGGCGCGCACCATCCACGAGCAGGGCGC
GCGCGCGGCCGGCCCCTTCGTGCCGGTCAACTGCGGCGCCATCCCGGCCGAATTGATGGAAAGCGAGTTCTTCGGCCACA
AGAAAGGCAGCTTCACCGGCGCACATGCCGACAAGCCGGGCCTGTTCCAGGCCGCACACGGCGGCACGCTGTTCCTAGAC
GAAGTGGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGTTGCGCGCGATCCAGGAAAAGTCAGTGCGCCCGGTCGGCGC
CTCGGGCGAAACCCTGGTGGACGTCCGCATCCTGTCGGCCACCCACAAGGACCTAGGCGACCTGGTCTCCGACGGCCGCT
TCCGTCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTCCCACCACTGCGCGAACGCGGTGGCGACCTGCCG
CAACTGGCCGCCGCCATCATCGCCCGGCTGGCGCACAGCCATGGCCGCCCGATCCCGCTGCTGACGCCCTCGGCGCTCGA
CGCACTGGACCAGTACGGCTTCCCCGGCAACGTGCGCGAGCTGGAAAACATCCTTGAACGCGCCCTGGCCCTGGCCGAGG
ACGACCAGATCAGCGCCAGCGACCTGCGCCTGCCCGCCCACGGCGGCCACCGCCTCGCCGCCGCCCCCGGCAGCGCCGCG
GTCGAACCGCGCGAAGCCGTCCACGACATCGACCCGGCGTCCGCCGCACTGCCTTCCTACATCGAGCAACTGGAGCGCGC
CGCGATCCAGAAAGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGTATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGCTTGGGATGGAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(421-461)

Sigma-54 interaction domain (Sigma54_activat)

(142-307)

Response regulator receiver domain (Response_reg)

(8-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.147

99.784

0.64
  pilR Acinetobacter baumannii strain A118

49.353

100

0.494