Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU30_RS11010 Genome accession   NZ_AP024887
Coordinates   2350995..2351627 (+) Length   210 a.a.
NCBI ID   WP_077314098.1    Uniprot ID   -
Organism   Vibrio palustris strain CECT 9027     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2345995..2356627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU30_RS10985 - 2346115..2348040 (+) 1926 WP_077314090.1 ABC transporter ATP-binding protein -
  OCU30_RS10990 - 2348040..2348519 (+) 480 WP_077314092.1 TIGR02444 family protein -
  OCU30_RS10995 - 2348538..2349524 (+) 987 WP_077314094.1 hydrolase -
  OCU30_RS11000 - 2349583..2349789 (+) 207 WP_077314096.1 YheU family protein -
  OCU30_RS11005 - 2349882..2350751 (+) 870 WP_077314097.1 phosphoribulokinase -
  OCU30_RS11010 crp 2350995..2351627 (+) 633 WP_077314098.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU30_RS11015 - 2351697..2352494 (-) 798 WP_077314100.1 DUF1338 domain-containing protein -
  OCU30_RS11020 astD 2352540..2354003 (-) 1464 WP_077314102.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU30_RS11025 astA 2354023..2355042 (-) 1020 WP_077314104.1 arginine N-succinyltransferase -
  OCU30_RS11030 - 2355142..2356353 (-) 1212 WP_077314106.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23524.30 Da        Isoelectric Point: 7.8387

>NTDB_id=89150 OCU30_RS11010 WP_077314098.1 2350995..2351627(+) (crp) [Vibrio palustris strain CECT 9027]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89150 OCU30_RS11010 WP_077314098.1 2350995..2351627(+) (crp) [Vibrio palustris strain CECT 9027]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACTTTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCTAA
AAGCACGCTAATTCATGCGGGCGAGAAGGCTGAAACATTGTACTACATTGTGAAAGGCTCAGTGGCGGTATTGATTAAAG
ATGAAGAAGGCAAGGAGATGATCCTTTCCTACTTGAACCAAGGTGACTTTATTGGTGAACTTGGTCTTTTTGAGGAAGGA
CAGGAACGTACCGCTTGGGTTCGTGCTAAGTCACCTTGTGAAGTGGCTGAAATTTCATTCAAGAAATTCCGTCAGTTAAT
TCAGGTTAACCCTGATATTCTGATGCGTCTCTCTGGTCAAATGGCAAGTCGTCTTCAAGTTACAAGTCAAAAGGTCGGTG
ATCTTGCCTTCCTAGACGTGACGGGTCGTATTGCTCAAACGCTATTAAACCTAGCGAAACAACCAGATGCAATGACTCAC
CCAGACGGTATGCAAATCAAGATTACGCGCCAAGAGATCGGCCAAATCGTTGGTTGCTCTCGCGAAACAGTGGGCCGTAT
ATTAAAAATGCTAGAAGAGCAGAACTTGATTTCTGCCCACGGTAAAACCATTGTTGTTTACGGTACACGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment