Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AAGT87_RS14235 Genome accession   NZ_CP152071
Coordinates   2076075..2078153 (-) Length   692 a.a.
NCBI ID   WP_341261140.1    Uniprot ID   -
Organism   Vibrio cholerae strain Sudan_2019_18     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2071075..2083153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAGT87_RS14215 (AAGT87_14220) greB 2071569..2072054 (+) 486 WP_000850496.1 transcription elongation factor GreB -
  AAGT87_RS14220 (AAGT87_14225) ompR 2072192..2072914 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  AAGT87_RS14225 (AAGT87_14230) envZ 2072983..2074299 (+) 1317 WP_001222687.1 two-component system sensor histidine kinase EnvZ -
  AAGT87_RS14230 (AAGT87_14235) - 2074324..2075730 (-) 1407 WP_000193487.1 uracil-xanthine permease family protein -
  AAGT87_RS14235 (AAGT87_14240) recG 2076075..2078153 (-) 2079 WP_341261140.1 ATP-dependent DNA helicase RecG Machinery gene
  AAGT87_RS14240 (AAGT87_14245) spoT 2078272..2080389 (-) 2118 WP_341261141.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  AAGT87_RS14245 (AAGT87_14250) rpoZ 2080421..2080693 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  AAGT87_RS14250 (AAGT87_14255) gmk 2080801..2081424 (-) 624 WP_000515790.1 guanylate kinase -
  AAGT87_RS14255 (AAGT87_14260) - 2081792..2082463 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76979.27 Da        Isoelectric Point: 7.7241

>NTDB_id=891460 AAGT87_RS14235 WP_341261140.1 2076075..2078153(-) (recG) [Vibrio cholerae strain Sudan_2019_18]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFTPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALVLLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQIRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLAKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHALNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
CLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=891460 AAGT87_RS14235 WP_341261140.1 2076075..2078153(-) (recG) [Vibrio cholerae strain Sudan_2019_18]
ATGTCACAACTCCTTTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACGGTGCAGGATCTGCTGTTTCATCTTCCACTGCGTTATGAAGATCGCACTCGCGTTTATCCGATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGTACACTGACACTGCGTTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAATTTGTGCATGCCTATGGGGAAATCAAACGCGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTACCCCTGCACAAACGCCCGATGTTGAGCCAAACCTGACTCCGGTTTACCCAACCACTGAAGGACTGCGCCAACTC
ACCCTACGTAATTTGACTGACCAAGCGTTGGTGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGACTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAGATCATTCATCGCCCATCGGCGGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAATTCGGCTGATCATGGAAGAGCTGCTGGCGCAAAATCTCTCTATGCTCGCGATTCGCAGT
CAAGGCCAGCAAGATGTGGCCTTGCCACTGGCACCCGTCCACCAACTCAAACAACAACTCTTAGCACAGCTTCCCTTTTC
ACCGACTAAGGCGCAGCAGCGCGTGGTTGCCGAAATCGAAGCCGATTTAGCCAAGCCGCACCCAATGATGCGCTTAGTGC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTAGCC
TTGATGGCTCCTACCGAGCTACTGGCCGAGCAGCACGCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
CGGCTGGCTCGCGGGTAAGCTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTTGGCACCCATGCTCTGTTTCAAGAGCAAGTGTCGTTTGACCATCTTGCCTTGGTCATTATTGATGAGCAGCATCGC
TTCGGGGTACATCAGCGTTTAGAGCTGCGCGAGAAAGGCGCAAAACAAGGCGCGTACCCGCATCAGCTCATTATGACTGC
TACTCCGATCCCGCGTACTTTGGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
CGAGGAACTGCAACGTAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAAAAACAAGCGG
TAATGCAGGCGTTTAAAAACAATGAGCTGCATCTGCTCGTCGCCACCACAGTGATTGAAGTGGGCGTGGATGTGCCTAAT
GCCAGCTTGATGATCATTGAAAACCCCGAACGTTTGGGGCTAGCTCAACTTCACCAGCTACGCGGCCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTGGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGCGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
TGCTTAGCCGATTTCAAAATTGCTGATCTGGTACGCGATCAGCAACTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAGAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAGCGCGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-170)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)

DEAD/DEAH box helicase (DEAD)

(271-432)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.744

97.11

0.493
  recG/mmsA Streptococcus pneumoniae R6

39.079

97.254

0.38
  recG/mmsA Streptococcus pneumoniae R36A

39.079

97.254

0.38
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37