Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AAFX34_RS22295 Genome accession   NZ_CP151937
Coordinates   3191647..3193728 (+) Length   693 a.a.
NCBI ID   WP_411132453.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3186647..3198728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS22275 (AAFX34_22830) gmk 3187496..3188119 (+) 624 WP_176299379.1 guanylate kinase -
  AAFX34_RS22280 (AAFX34_22835) rpoZ 3188246..3188518 (+) 273 WP_017420484.1 DNA-directed RNA polymerase subunit omega -
  AAFX34_RS22285 (AAFX34_22840) spoT 3188553..3190673 (+) 2121 WP_176299380.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  AAFX34_RS22290 (AAFX34_22845) trmH 3190761..3191447 (+) 687 WP_176299381.1 tRNA (guanosine(18)-2'-O)-methyltransferase TrmH -
  AAFX34_RS22295 (AAFX34_22850) recG 3191647..3193728 (+) 2082 WP_411132453.1 ATP-dependent DNA helicase RecG Machinery gene
  AAFX34_RS22300 (AAFX34_22855) - 3193984..3195387 (+) 1404 WP_411132454.1 uracil-xanthine permease family protein -
  AAFX34_RS22305 (AAFX34_22860) envZ 3195470..3196768 (-) 1299 WP_411132455.1 two-component system sensor histidine kinase EnvZ -
  AAFX34_RS22310 (AAFX34_22865) ompR 3196861..3197580 (-) 720 WP_011078925.1 two-component system response regulator OmpR -
  AAFX34_RS22315 (AAFX34_22870) greB 3197781..3198263 (-) 483 WP_013572566.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 76835.97 Da        Isoelectric Point: 7.5952

>NTDB_id=891399 AAFX34_RS22295 WP_411132453.1 3191647..3193728(+) (recG) [Vibrio vulnificus strain TBV029]
MSAQLLSAIPLTSLSGVGAKVAEKLEKIGLSSVQDLLFHLPLRYEDRTRIYPIAKLHAGLWAAVQGHVMQVDTLFGKRKM
LTVKLSDGNGTITLRFFNFTAAMKNNFAEGKLVHAYGEIKRGNMGLEIVHPDYKFFAPTQKPDVEQSLTPVYPTTDGLRQ
ITLRNLTDQALALLDKAAVQELLPAGLYDQQLTMGQALHIIHRPSPEMNLELFDEGKHPAQVRLIMEELLAQNLSMLAVR
SKGQQDVALPLPPVHQLKQQLLAQLPFSPTNAQARVVQEIEEDMQKAHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQV
ALMAPTELLAEQHAINFANWFEKMGIPVGWLAGKLKGKAKEAELARIASGEAKMVVGTHALFQEHVVFDHLALVIIDEQH
RFGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKREDIVERIRHACL
NEGKQAYWVCTLIDESEVLEAQAAADTAEELQRKLPDVRIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVP
NASLMIIENPERLGLAQLHQLRGRVGRGSVASHCVLLYHAPLSKTAQKRLSVLRESNDGFVIAQRDLEIRGPGELLGTKQ
TGLADFKIADLVRDQRLIPEVQRAARYIHHNYPQNAAAIIERWLGERDIYSKA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=891399 AAFX34_RS22295 WP_411132453.1 3191647..3193728(+) (recG) [Vibrio vulnificus strain TBV029]
ATGTCTGCCCAACTGTTATCTGCTATCCCCCTCACGTCCCTCAGTGGGGTCGGTGCTAAGGTGGCTGAAAAACTGGAGAA
AATTGGCCTAAGCAGCGTGCAAGACCTGCTGTTTCACTTGCCACTTCGTTACGAAGACCGCACCCGCATCTACCCGATTG
CCAAATTGCATGCCGGATTGTGGGCCGCTGTGCAGGGCCATGTGATGCAAGTGGATACCTTGTTTGGTAAACGCAAGATG
TTGACGGTGAAGCTCAGTGACGGTAATGGCACCATCACGTTGCGTTTTTTCAACTTTACCGCGGCAATGAAAAACAATTT
TGCCGAAGGTAAGTTAGTACACGCTTACGGCGAAATTAAGCGCGGTAATATGGGGCTGGAGATCGTTCACCCAGACTACA
AGTTTTTCGCCCCAACGCAGAAGCCCGATGTGGAACAGAGCTTAACGCCTGTTTATCCTACCACCGATGGCTTAAGGCAA
ATCACGCTGCGTAACCTCACAGACCAAGCCCTCGCCCTGCTCGATAAAGCCGCGGTTCAAGAGTTACTGCCTGCCGGGTT
GTATGACCAACAACTGACCATGGGGCAAGCGCTGCACATTATCCATCGTCCTTCGCCGGAGATGAATCTGGAACTGTTCG
ACGAAGGGAAGCACCCTGCCCAAGTTCGCTTAATTATGGAAGAGTTGCTGGCTCAGAACTTATCCATGCTCGCCGTGCGC
AGCAAAGGTCAGCAAGATGTCGCGCTGCCACTGCCCCCCGTCCACCAGCTTAAACAACAGCTGTTAGCCCAACTGCCTTT
TTCACCGACCAATGCCCAAGCGCGAGTGGTACAAGAAATTGAAGAAGACATGCAAAAAGCGCATCCGATGATGCGTTTGG
TGCAAGGGGATGTCGGTTCTGGCAAAACCTTAGTGGCAGCCTTGGCTGCGGTGCGCGCTATCGAACATGGCTACCAAGTG
GCGCTGATGGCGCCCACCGAACTGTTGGCCGAGCAGCACGCGATCAACTTCGCCAATTGGTTTGAAAAAATGGGCATTCC
CGTTGGCTGGCTCGCAGGCAAGCTCAAAGGCAAAGCCAAAGAAGCCGAATTAGCCCGCATTGCCAGTGGCGAAGCCAAAA
TGGTGGTCGGGACACATGCGCTGTTCCAAGAACACGTGGTGTTTGACCATCTTGCTCTTGTGATCATTGATGAACAGCAC
CGCTTTGGCGTACATCAACGCTTGGAACTGCGCGAAAAAGGCGCCAAACAAGGCGCTTACCCACATCAACTGATCATGAC
TGCTACTCCGATCCCTCGCACATTGGCCATGACCGCCTATGCCGATTTGGAAACATCGGTGATCGACGAGTTACCGCCGG
GACGAACCCCGATCCAAACCGTCGCGATTCCCGACACCAAACGCGAGGACATTGTCGAGCGTATTCGTCATGCCTGCCTC
AATGAGGGTAAGCAGGCGTATTGGGTCTGTACCCTGATTGATGAATCGGAAGTATTGGAAGCCCAAGCGGCAGCAGACAC
TGCCGAAGAGCTGCAACGTAAATTGCCTGATGTTCGCATTGGTTTGGTGCATGGCCGAATGAAACCAGCTGAAAAACAAG
CGGTGATGCAAGCGTTCAAAAACAATGAATTGCATCTTTTGGTGGCCACCACAGTGATCGAAGTCGGGGTCGATGTGCCC
AACGCCAGCTTGATGATCATCGAAAACCCAGAGCGCTTGGGTCTAGCACAATTGCACCAGTTGCGCGGTCGCGTCGGTCG
AGGCTCGGTAGCAAGCCACTGCGTATTGCTCTATCACGCTCCGCTGTCCAAAACAGCGCAAAAGCGCCTCTCGGTGCTGC
GCGAAAGTAACGATGGTTTCGTCATTGCTCAGCGCGATCTTGAGATCCGCGGGCCAGGTGAGCTGCTCGGCACCAAACAA
ACTGGCCTAGCGGATTTCAAAATTGCCGATCTCGTCCGCGACCAGCGCCTGATCCCCGAAGTTCAGCGCGCCGCACGCTA
CATTCACCACAATTACCCACAAAATGCCGCCGCGATTATTGAACGCTGGTTGGGCGAGCGTGATATTTATTCTAAGGCGT
GA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(271-433)

RecG wedge domain (RecG_wedge)

(15-172)

Helicase conserved C-terminal domain (Helicase_C)

(480-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-675)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.256

96.97

0.478
  recG/mmsA Streptococcus pneumoniae R6

40.238

96.825

0.39
  recG/mmsA Streptococcus pneumoniae R36A

40.238

96.825

0.39
  recG Bacillus subtilis subsp. subtilis str. 168

38.864

96.537

0.375