Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   AAFX34_RS18255 Genome accession   NZ_CP151937
Coordinates   2334267..2336297 (-) Length   676 a.a.
NCBI ID   WP_013572115.1    Uniprot ID   -
Organism   Vibrio vulnificus strain TBV029     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2329267..2341297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFX34_RS18230 (AAFX34_18785) moaB 2329357..2329869 (-) 513 WP_011080888.1 molybdenum cofactor biosynthesis protein B -
  AAFX34_RS18235 (AAFX34_18790) moaA 2329950..2330939 (-) 990 WP_039553216.1 GTP 3',8-cyclase MoaA -
  AAFX34_RS18240 (AAFX34_18795) - 2331255..2332145 (+) 891 WP_011080890.1 YvcK family protein -
  AAFX34_RS18245 (AAFX34_18800) luxU 2332246..2332593 (-) 348 WP_011080891.1 quorum-sensing phosphorelay protein LuxU -
  AAFX34_RS18250 (AAFX34_18805) luxO 2332593..2333993 (-) 1401 WP_011149911.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  AAFX34_RS18255 (AAFX34_18810) uvrB 2334267..2336297 (-) 2031 WP_013572115.1 excinuclease ABC subunit UvrB Machinery gene
  AAFX34_RS18265 (AAFX34_18820) rsxA 2337179..2337757 (+) 579 WP_011080895.1 electron transport complex subunit RsxA -
  AAFX34_RS18270 (AAFX34_18825) rsxB 2337759..2338355 (+) 597 WP_011080896.1 electron transport complex subunit RsxB -
  AAFX34_RS18275 (AAFX34_18830) rsxC 2338368..2341127 (+) 2760 WP_061058363.1 electron transport complex subunit RsxC -

Sequence

Protein


Download         Length: 676 a.a.        Molecular weight: 77090.88 Da        Isoelectric Point: 5.0918

>NTDB_id=891381 AAFX34_RS18255 WP_013572115.1 2334267..2336297(-) (uvrB) [Vibrio vulnificus strain TBV029]
MSKLYDLVSDYAPSGDQPTAIKQLTEGLDAGLAHQTLLGVTGSGKTFTLANVIAQAQRPAILLAPNKTLAAQLYGEMKAF
FPNNAVEYFVSYYDYYQPEAYVPTTDTFIEKDSSVNAHIEQMRLSATKALLERKDAIIVASVSAIYGLGDPEAYLQMMLH
IRRGDVMDQRDILRRLAELQYSRNDIAFERGQFRVRGEVIDVFPAESDQDAVRIEMFDDEIDCISVFDPLTGVVKQRDLP
RFTIYPKTHYVTPRERILQAIENIKQELRERQTYLRDNNKLLEEQRISQRTQFDIEMMNELGFCSGIENYSRYLSGRAEG
EPPPTLFDYLPHDGLLIIDESHVTVPQIGAMYKGDRSRKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIFVSATPGNY
ELEKSAGEIADQVVRPTGLLDPVLEVRPVATQVDDLLSEIRIRAVKDERVLVTTLTKRMAEDLTEYLHEHDVKVRYLHSD
IDTVERVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLHGKAILYADSITK
SMKKAMDETERRREKQQAYNEKMGIQPQALKRNIKDIMELGDITKSRKQKVSKTVPLSKVAEPSLSYNVLTPQQLEKEIT
KLEAQMYKHAQNLEFELAAQKRDEIEKLRQQFIANS

Nucleotide


Download         Length: 2031 bp        

>NTDB_id=891381 AAFX34_RS18255 WP_013572115.1 2334267..2336297(-) (uvrB) [Vibrio vulnificus strain TBV029]
ATGAGCAAACTTTACGATCTGGTTTCTGACTATGCGCCATCGGGAGATCAACCAACGGCGATCAAACAACTGACAGAAGG
GTTGGATGCTGGCTTGGCTCACCAAACCTTACTTGGGGTGACGGGATCCGGTAAAACATTTACTTTGGCGAATGTGATTG
CTCAAGCACAACGTCCTGCAATTCTGCTCGCGCCAAACAAAACTCTTGCCGCCCAACTTTACGGCGAGATGAAAGCGTTT
TTCCCCAATAACGCGGTCGAATATTTTGTCTCTTACTACGATTATTACCAACCTGAAGCCTATGTGCCAACCACCGACAC
CTTTATAGAGAAGGACTCATCGGTCAACGCTCATATTGAACAAATGCGTTTATCGGCCACCAAAGCGTTATTGGAGCGAA
AAGACGCTATTATCGTCGCCTCTGTTTCGGCTATTTATGGTTTGGGTGATCCCGAGGCCTACCTGCAAATGATGTTGCAT
ATACGCCGTGGTGATGTGATGGATCAACGCGACATACTGCGCCGTTTGGCTGAGCTGCAATATAGCCGTAACGATATTGC
TTTTGAACGAGGCCAATTTCGCGTGCGCGGAGAGGTGATCGACGTTTTTCCGGCTGAATCGGACCAAGATGCGGTGCGCA
TCGAGATGTTTGATGATGAGATCGACTGCATCAGTGTGTTTGATCCACTGACCGGAGTGGTCAAACAACGCGATTTACCC
CGCTTTACTATTTACCCTAAGACTCACTACGTCACACCTCGAGAGCGTATTCTGCAGGCGATTGAAAACATCAAACAAGA
GCTGCGTGAGCGACAAACTTACTTGCGTGACAACAATAAATTGTTGGAAGAGCAACGTATTAGTCAGCGTACCCAATTCG
ATATTGAAATGATGAATGAGCTGGGATTCTGCTCTGGCATCGAAAACTACTCGCGTTACCTCAGCGGTCGAGCGGAAGGT
GAGCCGCCTCCAACGTTATTTGACTACTTACCACACGACGGTTTGTTGATCATTGATGAATCTCACGTGACAGTGCCACA
AATTGGCGCAATGTATAAAGGTGACCGCTCACGGAAAGAGACCTTGGTTGAATATGGTTTCCGTTTGCCTTCAGCATTGG
ACAATCGACCATTGAAATTTGAAGAGTTCGAAGCGCTTGCGCCACAAACTATTTTCGTTTCAGCCACTCCGGGTAATTAC
GAACTAGAGAAAAGTGCGGGCGAAATTGCTGACCAAGTGGTGCGTCCGACCGGATTGCTCGATCCTGTACTGGAAGTGCG
ACCAGTGGCGACTCAAGTGGATGATCTGCTTTCTGAGATCCGCATTCGCGCGGTGAAAGATGAACGCGTGTTAGTGACAA
CACTGACCAAACGTATGGCGGAAGATCTAACTGAATACTTGCATGAGCACGATGTGAAAGTGCGTTACCTACACTCTGAT
ATCGACACGGTTGAACGAGTGGAGATCATTCGTGACTTGAGGCTAGGGGAGTTCGATGTGTTGGTGGGGATTAACTTGTT
ACGCGAGGGTCTCGACATGCCTGAAGTGTCTTTGGTTGCGATTCTCGATGCTGATAAAGAAGGCTTTTTACGTTCAGAGC
GCTCATTGATTCAGACCATTGGCCGTGCAGCCCGTAACCTCCATGGTAAAGCGATCTTGTATGCAGACTCCATCACCAAA
TCGATGAAGAAAGCGATGGATGAAACTGAACGACGCCGTGAGAAACAGCAAGCGTACAATGAAAAGATGGGCATTCAGCC
TCAAGCCTTGAAGCGTAATATCAAAGATATTATGGAGCTGGGCGATATTACGAAATCCCGCAAGCAGAAAGTGAGCAAAA
CGGTGCCATTGTCGAAAGTGGCTGAACCATCGCTGTCCTATAATGTGTTGACACCACAGCAATTGGAAAAAGAAATCACA
AAACTGGAAGCGCAAATGTACAAACACGCTCAGAATTTGGAATTTGAGTTGGCCGCGCAGAAGCGTGATGAAATTGAAAA
GTTGCGTCAGCAGTTTATTGCTAACAGCTAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(16-138)

Helicase conserved C-terminal domain (Helicase_C)

(440-545)

Ultra-violet resistance protein B (UvrB)

(553-594)

UvrB/uvrC motif (UVR)

(636-671)

UvrB interaction domain (UvrB_inter)

(159-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.297

97.485

0.549
  uvrB Streptococcus pneumoniae R6

56.297

97.485

0.549
  uvrB Streptococcus pneumoniae D39

56.297

97.485

0.549