Detailed information NTG0089115

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCU38_RS10445
• Genome accession: NZ_AP024885
• Coordinates: 2261249..2262223 (-)
• Length: 324 a.a.
• NCBI ID: WP_261823024.1
• Uniprot ID: -
• Organism: Vibrio neonatus strain JCM 21521
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2256249..2267223

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCU38_RS10430	recA	2256829..2257869 (-)	1041	WP_174371941.1	recombinase RecA	Machinery gene
OCU38_RS10435	pncC	2257963..2258457 (-)	495	WP_261823022.1	nicotinamide-nucleotide amidase	-
OCU38_RS10440	mutS	2258540..2261107 (+)	2568	WP_261823023.1	DNA mismatch repair protein MutS	-
OCU38_RS10445	rpoS	2261249..2262223 (-)	975	WP_261823024.1	RNA polymerase sigma factor RpoS	Regulator
OCU38_RS10450	-	2262270..2263097 (-)	828	WP_261823025.1	peptidoglycan DD-metalloendopeptidase family protein	-
OCU38_RS10455	-	2263102..2263728 (-)	627	WP_261823026.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCU38_RS10460	surE	2263730..2264470 (-)	741	WP_261823027.1	5'/3'-nucleotidase SurE	-
OCU38_RS10465	truD	2264479..2265510 (-)	1032	WP_261823028.1	tRNA pseudouridine(13) synthase TruD	-
OCU38_RS10470	ispF	2265527..2266009 (-)	483	WP_021712274.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCU38_RS10475	ispD	2266012..2266710 (-)	699	WP_261823029.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCU38_RS10480	ftsB	2266731..2267006 (-)	276	WP_261823030.1	cell division protein FtsB	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 36987.96 Da
• Isoelectric Point: 4.6344

>NTDB_id=89115 OCU38_RS10445 WP_261823024.1 2261249..2262223(-) (rpoS) [Vibrio neonatus strain JCM 21521]
MSMDNTAAKVDDLVEDKANDELGAGIVEAVEQTLAKEEFDVSAKNLDATQLYLGEIGFSPLLTAEEEVLYARRSLRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIAQKLDKPVDDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDINNSDPEVS
TQDDDIKHSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILLKQGLNMESLFN
FDSE

Nucleotide

• Length: 975 bp

>NTDB_id=89115 OCU38_RS10445 WP_261823024.1 2261249..2262223(-) (rpoS) [Vibrio neonatus strain JCM 21521]
ATGAGTATGGATAACACAGCAGCAAAAGTGGATGACTTAGTTGAAGATAAAGCCAATGACGAGCTAGGAGCTGGCATCGT
CGAAGCGGTTGAACAAACCCTTGCCAAGGAAGAGTTTGACGTTTCAGCAAAGAATTTAGATGCAACCCAACTGTATCTTG
GTGAGATTGGTTTCTCGCCTCTTCTCACAGCCGAAGAAGAAGTGCTCTATGCACGACGCTCTTTGCGCGGTGATGAAGCC
GCTCGTAAACGTATGATTGAAAGTAACCTGCGTTTGGTTGTGAAAATTTCCCGTCGTTACAGTAACCGTGGATTGGCTCT
ACTTGATCTTATCGAAGAGGGTAACCTTGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCTGAGCGTGGCTTCCGTTTCT
CTACTTACGCTACATGGTGGATTCGTCAAACTATCGAACGCGCTTTGATGAACCAAACTCGTACTATTCGTCTGCCTATT
CACGTAGTTAAAGAGCTTAATATTTATCTGCGTACCGCTCGTGAGCTTTCGCAAAAGCTAGACCACGAACCGACTGCAGA
AGAAATCGCCCAGAAACTGGATAAGCCGGTAGACGATGTCAGCAAAATGCTGCGTTTGAACGAACGTGTGAGTTCAGTAG
ATACGCCAATTGGCGGTGATGGCGATAAAGCATTGCTCGATATCATTCCAGATATCAACAACTCAGATCCTGAAGTCTCT
ACCCAAGATGATGACATCAAACACTCTTTAATTGATTGGTTAGATGAACTGAACCCGAAACAAAAAGAAGTGCTGGCACG
TCGTTTTGGCTTATTGGGTTACGAACCATCGACTCTAGAGGAAGTAGGGCGTGAAATTAGCCTGACTCGTGAGCGAGTTC
GTCAGATCCAAGTAGAAGGTCTACGCCGATTAAGAGAGATTCTATTGAAGCAAGGTCTGAACATGGAATCGCTATTTAAC
TTTGATAGCGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.791	100	0.846