Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RYX39_RS18125 Genome accession   NZ_CP136430
Coordinates   3527965..3528654 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus halotolerans strain Q2H2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3522965..3533654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS18090 (RYX39_18090) flgN 3523146..3523628 (-) 483 WP_106019636.1 flagellar protein FlgN -
  RYX39_RS18095 (RYX39_18095) flgM 3523644..3523910 (-) 267 WP_106019637.1 flagellar biosynthesis anti-sigma factor FlgM -
  RYX39_RS18100 (RYX39_18100) - 3523990..3524409 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  RYX39_RS18105 (RYX39_18105) comFC 3524483..3525205 (-) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  RYX39_RS18110 (RYX39_18110) - 3525169..3525465 (-) 297 WP_024123028.1 late competence development ComFB family protein -
  RYX39_RS18115 (RYX39_18115) comFA 3525522..3526916 (-) 1395 WP_316961118.1 ATP-dependent helicase ComFA Machinery gene
  RYX39_RS18120 (RYX39_18120) - 3527023..3527868 (-) 846 WP_106019639.1 DegV family protein -
  RYX39_RS18125 (RYX39_18125) degU 3527965..3528654 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RYX39_RS18130 (RYX39_18130) degS 3528737..3529894 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  RYX39_RS18135 (RYX39_18135) - 3530111..3530764 (+) 654 WP_044159478.1 YigZ family protein -
  RYX39_RS18140 (RYX39_18140) - 3530764..3531942 (+) 1179 WP_024123032.1 LCP family protein -
  RYX39_RS18145 (RYX39_18145) - 3532014..3533090 (-) 1077 WP_010332075.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=891062 RYX39_RS18125 WP_003219701.1 3527965..3528654(-) (degU) [Bacillus halotolerans strain Q2H2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=891062 RYX39_RS18125 WP_003219701.1 3527965..3528654(-) (degU) [Bacillus halotolerans strain Q2H2]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAGCGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCGGAAGGAGACGACGGAGATGAAGCGGCTCGTATCGTTGAGCACTATCATCCTGATGTCGTGA
TCATGGATATCAATATGCCGAACGTAAATGGCGTGGAAGCTACAAAGCAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAGAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACACTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCACCCGAAGGTTACTCACA
ATCTCGTAAACGAATTCCGACGTCTTGCAACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTCTATCCAGAGATTCGC
AGACCATTACATATTTTAACAAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGCATCGG
TGAATCATTGTTTATCAGTGAAAAAACTGTTAAAAACCATGTCAGCAATATCTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTGGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1