Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RYX39_RS18115 Genome accession   NZ_CP136430
Coordinates   3525522..3526916 (-) Length   464 a.a.
NCBI ID   WP_316961118.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3520522..3531916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS18080 (RYX39_18080) flgL 3520698..3521594 (-) 897 WP_106019635.1 flagellar hook-associated protein FlgL -
  RYX39_RS18085 (RYX39_18085) flgK 3521604..3523127 (-) 1524 WP_095712911.1 flagellar hook-associated protein FlgK -
  RYX39_RS18090 (RYX39_18090) flgN 3523146..3523628 (-) 483 WP_106019636.1 flagellar protein FlgN -
  RYX39_RS18095 (RYX39_18095) flgM 3523644..3523910 (-) 267 WP_106019637.1 flagellar biosynthesis anti-sigma factor FlgM -
  RYX39_RS18100 (RYX39_18100) - 3523990..3524409 (-) 420 WP_024123026.1 TIGR03826 family flagellar region protein -
  RYX39_RS18105 (RYX39_18105) comFC 3524483..3525205 (-) 723 WP_127696434.1 phosphoribosyltransferase family protein Machinery gene
  RYX39_RS18110 (RYX39_18110) - 3525169..3525465 (-) 297 WP_024123028.1 late competence development ComFB family protein -
  RYX39_RS18115 (RYX39_18115) comFA 3525522..3526916 (-) 1395 WP_316961118.1 ATP-dependent helicase ComFA Machinery gene
  RYX39_RS18120 (RYX39_18120) - 3527023..3527868 (-) 846 WP_106019639.1 DegV family protein -
  RYX39_RS18125 (RYX39_18125) degU 3527965..3528654 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RYX39_RS18130 (RYX39_18130) degS 3528737..3529894 (-) 1158 WP_024123030.1 two-component sensor histidine kinase DegS Regulator
  RYX39_RS18135 (RYX39_18135) - 3530111..3530764 (+) 654 WP_044159478.1 YigZ family protein -

Sequence

Protein


Download         Length: 464 a.a.        Molecular weight: 52812.93 Da        Isoelectric Point: 9.7825

>NTDB_id=891061 RYX39_RS18115 WP_316961118.1 3525522..3526916(-) (comFA) [Bacillus halotolerans strain Q2H2]
MQTKTSESNSPFSKELQQQLQGRHLLKTEIPFSDEIIDWHIEHGYISAEESISKNKWGYRCNRCGQNDQQYFSSYHSSGE
DKVYCRSCVMMGRVSEDISLYSWCKEAEANWKPIKLTWDGKLSSGQQKAADVLIEAISKQEELLIWAVCGAGKTELLFPG
IESALNLRLRVCIATPRTDVVLELAPRLKAAFQGADISVLYGGSDDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFP
YSADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTYKGELKSVRIPARYHRKPLPEPRFQWCGNWKKKLTRNKIPNAVK
RWIERHVKEGKPVFLFVPSISVLVKAASCFKNMNYRTAAVHAEDKLRKEKVQQFRDGQFDLLITTTILERGVTVPMVQTG
ILGAESPIFTESALVQIAGRTGRHKEHADGDVIYFHFGKTKSMIEARKHIKIMNELALKNKLID

Nucleotide


Download         Length: 1395 bp        

>NTDB_id=891061 RYX39_RS18115 WP_316961118.1 3525522..3526916(-) (comFA) [Bacillus halotolerans strain Q2H2]
ATGCAGACTAAGACATCAGAATCGAACAGCCCATTCTCTAAAGAACTGCAGCAGCAGCTTCAGGGCCGTCATCTGCTTAA
AACAGAAATCCCATTTTCTGACGAGATCATTGATTGGCATATCGAGCATGGTTATATATCTGCCGAGGAGTCTATATCAA
AAAATAAATGGGGATATAGATGCAATAGATGCGGTCAAAATGATCAACAGTATTTTTCTTCGTATCATTCATCAGGAGAA
GATAAAGTATACTGCCGCTCTTGTGTCATGATGGGCAGAGTGAGTGAGGATATTTCTTTATATTCCTGGTGCAAGGAGGC
AGAGGCAAACTGGAAGCCTATAAAACTGACTTGGGATGGAAAGCTTTCAAGCGGACAGCAAAAGGCCGCTGACGTCTTAA
TTGAAGCAATTTCGAAGCAAGAAGAGCTCCTTATTTGGGCTGTTTGCGGCGCAGGTAAAACTGAATTATTATTCCCGGGT
ATAGAATCGGCATTAAATCTAAGACTGCGTGTTTGTATTGCGACCCCGCGCACCGATGTTGTATTAGAGCTTGCTCCGAG
ACTGAAGGCTGCATTTCAGGGTGCTGATATTTCAGTTCTATACGGAGGAAGTGATGACAAAGGGCGTTTATCTCCGCTTA
TGATTTCCACAACCCATCAGCTTTTGCGTTATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTGGATGCTTTTCCA
TATTCCGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCGAGAAAGAAAAACAGCACTCTTGTTTATCTAAGCGCAAC
ACCTCCTAAAGAATTAAAAAGAAAAACGTATAAAGGTGAGTTAAAATCCGTTCGCATACCGGCCAGATACCATCGGAAGC
CATTGCCTGAACCGCGCTTTCAGTGGTGCGGAAACTGGAAAAAGAAATTAACCCGAAACAAAATCCCAAATGCGGTAAAA
AGATGGATAGAACGGCATGTGAAAGAAGGAAAGCCCGTTTTTTTATTTGTTCCTTCCATTTCTGTTCTGGTAAAAGCTGC
TTCCTGTTTTAAAAACATGAATTATCGAACAGCGGCTGTACATGCGGAAGATAAGCTCAGAAAAGAAAAAGTGCAGCAAT
TTCGAGACGGTCAGTTTGATCTGTTAATCACAACAACAATATTGGAAAGAGGTGTCACAGTTCCTATGGTCCAAACAGGC
ATCTTAGGGGCAGAATCGCCCATCTTTACGGAAAGCGCGCTTGTGCAAATCGCGGGAAGGACAGGACGGCATAAAGAACA
TGCAGACGGCGATGTCATTTATTTTCACTTCGGAAAAACAAAGAGTATGATTGAGGCAAGAAAACATATAAAAATAATGA
ATGAATTGGCTTTAAAAAATAAATTGATAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(325-424)

Type III restriction enzyme, res subunit (ResIII)

(121-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

84.061

98.707

0.83