Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   RYX39_RS16185 Genome accession   NZ_CP136430
Coordinates   3138573..3139217 (-) Length   214 a.a.
NCBI ID   WP_168748642.1    Uniprot ID   A0AAP3CWI3
Organism   Bacillus halotolerans strain Q2H2     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3133573..3144217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS16150 (RYX39_16150) - 3134766..3135197 (+) 432 WP_255001771.1 Na(+)/H(+) antiporter subunit B -
  RYX39_RS16155 (RYX39_16155) - 3135197..3135538 (+) 342 WP_255001772.1 Na(+)/H(+) antiporter subunit C -
  RYX39_RS16160 (RYX39_16160) - 3135531..3137012 (+) 1482 WP_255001783.1 Na+/H+ antiporter subunit D -
  RYX39_RS16165 (RYX39_16165) - 3137018..3137494 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  RYX39_RS16170 (RYX39_16170) - 3137494..3137778 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  RYX39_RS16175 (RYX39_16175) mnhG 3137762..3138136 (+) 375 WP_255001787.1 monovalent cation/H(+) antiporter subunit G -
  RYX39_RS16180 (RYX39_16180) - 3138175..3138555 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  RYX39_RS16185 (RYX39_16185) comA 3138573..3139217 (-) 645 WP_168748642.1 two-component system response regulator ComA Regulator
  RYX39_RS16190 (RYX39_16190) comP 3139298..3141595 (-) 2298 WP_255001792.1 histidine kinase Regulator
  RYX39_RS16195 (RYX39_16195) comX 3141603..3141764 (-) 162 WP_255001794.1 competence pheromone ComX -
  RYX39_RS16200 (RYX39_16200) - 3141779..3142639 (-) 861 WP_255001796.1 polyprenyl synthetase family protein -
  RYX39_RS16205 (RYX39_16205) degQ 3142824..3142964 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  RYX39_RS16210 (RYX39_16210) - 3143425..3143793 (+) 369 WP_106019478.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24172.52 Da        Isoelectric Point: 4.6801

>NTDB_id=891055 RYX39_RS16185 WP_168748642.1 3138573..3139217(-) (comA) [Bacillus halotolerans strain Q2H2]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIRQHDFSSYDLILMDLNLGGDVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFTYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=891055 RYX39_RS16185 WP_168748642.1 3138573..3139217(-) (comA) [Bacillus halotolerans strain Q2H2]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCCAGCGAACAGTTCATACGCCAGCATGATTTCTCATCATATGATCTCATTTTAA
TGGATTTGAACTTAGGCGGCGATGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTATATACCGGTTATGAGGTCGAGGATTATTTTGAGGAAGCGATTCGTGCGGGTCTGCACGGCGCCATCAGCAAAAC
CGAATCAAAGGAAAAGATCACCCAATACATATATCACGTGCTCAACGGAGAAATTTTAGTCGATTTCACTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCCCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCAAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGTTTTACCAACCAAGAAATTGCAGATGCGCTTCATTTAAGCAAGCGGTCCATCGAATA
CAGCCTGACGTCGATTTTCAACAAGCTTAATGTCGGTTCCAGGACGGAAGCGGTGTTGATTGCAAAATCAGACGGTGTGC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

98.598

100

0.986