Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   RYX39_RS16190 Genome accession   NZ_CP136430
Coordinates   3139298..3141595 (-) Length   765 a.a.
NCBI ID   WP_255001792.1    Uniprot ID   -
Organism   Bacillus halotolerans strain Q2H2     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3134298..3146595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RYX39_RS16150 (RYX39_16150) - 3134766..3135197 (+) 432 WP_255001771.1 Na(+)/H(+) antiporter subunit B -
  RYX39_RS16155 (RYX39_16155) - 3135197..3135538 (+) 342 WP_255001772.1 Na(+)/H(+) antiporter subunit C -
  RYX39_RS16160 (RYX39_16160) - 3135531..3137012 (+) 1482 WP_255001783.1 Na+/H+ antiporter subunit D -
  RYX39_RS16165 (RYX39_16165) - 3137018..3137494 (+) 477 WP_044158941.1 Na+/H+ antiporter subunit E -
  RYX39_RS16170 (RYX39_16170) - 3137494..3137778 (+) 285 WP_024122677.1 Na(+)/H(+) antiporter subunit F1 -
  RYX39_RS16175 (RYX39_16175) mnhG 3137762..3138136 (+) 375 WP_255001787.1 monovalent cation/H(+) antiporter subunit G -
  RYX39_RS16180 (RYX39_16180) - 3138175..3138555 (-) 381 WP_044158943.1 hotdog fold thioesterase -
  RYX39_RS16185 (RYX39_16185) comA 3138573..3139217 (-) 645 WP_168748642.1 two-component system response regulator ComA Regulator
  RYX39_RS16190 (RYX39_16190) comP 3139298..3141595 (-) 2298 WP_255001792.1 histidine kinase Regulator
  RYX39_RS16195 (RYX39_16195) comX 3141603..3141764 (-) 162 WP_255001794.1 competence pheromone ComX -
  RYX39_RS16200 (RYX39_16200) - 3141779..3142639 (-) 861 WP_255001796.1 polyprenyl synthetase family protein -
  RYX39_RS16205 (RYX39_16205) degQ 3142824..3142964 (-) 141 WP_024122683.1 degradation enzyme regulation protein DegQ Regulator
  RYX39_RS16210 (RYX39_16210) - 3143425..3143793 (+) 369 WP_106019478.1 hypothetical protein -
  RYX39_RS16215 (RYX39_16215) - 3143769..3144998 (-) 1230 WP_255001801.1 EAL and HDOD domain-containing protein -

Sequence


Protein


Download         Length: 765 a.a.        Molecular weight: 88526.03 Da        Isoelectric Point: 7.5604

>NTDB_id=891056 RYX39_RS16190 WP_255001792.1 3139298..3141595(-) (comP) [Bacillus halotolerans strain Q2H2]
MKSRTNKISVLLVVISLLYVIYLTYISNNNLLVGATVSKGKNGDVVITNVDEYSMASYSGIEKGDLVKSINNQKINTKEI
KMNKLKNVSSMVVERNGKDVELKLTLFNDKNFSTYLIPLMFYIVCLFCCLFILKINESKDLLSALVLIIFLLSASIAYIS
AGVSVKGDILCRCIMVVTLISVPLNYLLFLYHYFRELGTTLFDKKVFILYLVPIINVVCEMFRSHLFFRDYVPKLSLLSF
FFLFIIVVIYFCIILIKNKDTEQAHIIKVLTVINIFSFAPFLCLYLIPYVFLNAHYVSSFLAASFMMLIPFSLVFQFMTN
KIYNVDFILSRLRYYGFLALTPTIILISTIELISSPDSDFYSVKLTFLIYIIMLAVFYYKEVLDFRFRLKRVSEKFNYQD
SIYKFTQLIRDSTFLTQVFEELKNTILEVSLVSRAYVYEVSADGSIKLYDDETVNSFEKVYQKEFRKVTSEIGKIVEFNK
GFVMKIGERGGKSFVILCLSKMNTPRLTLEELSWLKTLAFYTNVSIENVMKIEELMSHLEEIKQQESNPVWLKKLMYTIE
EKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKDDDPCREEVQDKLVQMNEQMSDVISMTRETCHELRPQLLYDLGLV
KALSKLVAQQQERVPFHIRLNTGRFTASLDLDSQLNLYRIIQEFLSNAVKHSQATEVLIMLISIQNKIVLHYEDDGVGFD
QEKTNEHSMSMGLSGIKERVRALDGRLRIETSEGKGFKADIEMEL

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=891056 RYX39_RS16190 WP_255001792.1 3139298..3141595(-) (comP) [Bacillus halotolerans strain Q2H2]
ATGAAGTCTAGAACCAATAAAATTTCTGTATTGTTAGTTGTAATAAGTCTGTTATATGTTATTTATTTGACCTATATAAG
CAATAATAATTTGTTAGTTGGAGCAACTGTTTCGAAAGGGAAGAACGGGGACGTTGTAATTACCAATGTAGATGAATATT
CAATGGCATCATACAGCGGAATAGAAAAAGGGGATCTCGTAAAGAGTATTAATAATCAAAAAATAAACACTAAAGAAATA
AAAATGAATAAGCTTAAAAATGTAAGTTCAATGGTTGTTGAGAGAAATGGCAAGGATGTTGAGCTAAAGCTGACCTTATT
TAATGATAAAAATTTTTCTACTTACTTAATACCGTTAATGTTTTATATTGTTTGTTTATTTTGTTGCCTATTTATATTAA
AAATAAATGAATCGAAGGATTTACTATCTGCTTTAGTTTTAATTATATTTTTGTTATCTGCTTCTATTGCTTATATAAGC
GCAGGAGTTTCTGTTAAAGGCGATATACTATGCAGATGTATTATGGTGGTAACATTAATATCTGTACCGCTAAACTATCT
TCTCTTTCTTTATCATTATTTTAGAGAGTTAGGCACTACCTTATTTGATAAAAAAGTTTTCATTTTATATTTAGTACCGA
TCATAAATGTAGTGTGTGAAATGTTTCGTTCACATCTTTTCTTTCGTGATTATGTGCCTAAATTAAGTTTACTATCTTTT
TTCTTTTTATTTATCATAGTAGTGATTTATTTCTGTATCATTTTAATTAAAAATAAAGATACTGAACAAGCGCATATTAT
TAAGGTCCTCACTGTTATTAATATCTTTTCTTTTGCACCTTTTTTGTGTTTATATTTGATACCTTATGTGTTTCTAAATG
CGCACTATGTTTCTTCCTTTTTAGCAGCTTCATTTATGATGTTAATACCTTTCTCCTTGGTATTTCAATTTATGACAAAT
AAAATCTATAATGTGGATTTTATTTTAAGCAGATTAAGATATTATGGCTTTTTAGCTTTAACGCCAACAATTATTCTAAT
CTCTACAATTGAATTAATTAGTAGTCCTGATAGTGATTTTTATAGTGTTAAACTAACATTTTTAATTTATATTATCATGT
TGGCGGTCTTTTATTATAAAGAAGTACTTGATTTCAGGTTTAGATTAAAAAGGGTCTCGGAAAAATTCAATTATCAAGAT
AGTATATATAAATTTACGCAGCTGATTAGAGACTCAACATTCCTGACTCAAGTATTTGAAGAACTGAAAAATACTATACT
TGAGGTCTCTCTAGTTAGCCGAGCATATGTATATGAAGTTTCAGCAGACGGAAGTATTAAGCTATATGATGATGAGACCG
TAAATTCATTCGAAAAAGTCTATCAAAAAGAATTTAGAAAAGTAACATCCGAAATAGGAAAAATCGTTGAATTTAATAAA
GGCTTTGTCATGAAGATAGGTGAACGCGGCGGAAAATCATTTGTGATTCTTTGTTTATCTAAAATGAATACGCCCCGTCT
TACACTTGAAGAACTTTCTTGGCTGAAAACCTTGGCGTTTTATACAAACGTATCGATTGAAAACGTCATGAAAATCGAAG
AGCTGATGAGTCATTTAGAAGAAATAAAACAACAGGAATCAAACCCCGTTTGGCTCAAAAAACTCATGTACACGATCGAA
GAAAAACAACGCTCTGATCTCGCCCGCGATCTCCACGATTCAGTTCTTCAGGATTTGATTTCATTAAAACGGCAGTGTGA
GCTGTTTTTGGCTGATTTTAAGAAGGATGATGATCCATGCCGTGAAGAGGTGCAGGACAAGCTCGTGCAGATGAATGAGC
AGATGTCTGATGTAATTTCGATGACGAGGGAGACGTGTCATGAATTGCGGCCGCAGCTTTTGTATGATTTGGGACTGGTG
AAGGCGTTGTCCAAGCTGGTGGCGCAGCAGCAGGAGCGGGTTCCGTTTCATATTCGCTTAAATACCGGCAGATTTACGGC
GTCGCTTGATTTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAGAGTTTTTATCGAATGCAGTGAAACACTCTCAGG
CGACGGAAGTGCTTATTATGCTGATTAGCATTCAAAACAAAATTGTTCTTCATTATGAGGACGATGGTGTGGGATTTGAT
CAAGAGAAAACCAACGAACATTCCATGAGTATGGGTCTTTCTGGCATTAAGGAGCGAGTCAGGGCTTTAGATGGACGCCT
CCGAATCGAAACAAGTGAAGGAAAGGGCTTTAAGGCCGATATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

58.808

100

0.593