Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   WLF14_RS30060 Genome accession   NZ_CP151816
Coordinates   6575869..6577944 (+) Length   691 a.a.
NCBI ID   WP_024078114.1    Uniprot ID   A0ACA7PFE7
Organism   Pseudomonas fluorescens strain IMGN2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6570869..6582944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WLF14_RS30030 (WLF14_30030) exbD 6571778..6572203 (+) 426 WP_003195519.1 TonB system transport protein ExbD -
  WLF14_RS30035 (WLF14_30035) - 6572200..6572949 (+) 750 WP_342308565.1 energy transducer TonB -
  WLF14_RS30040 (WLF14_30040) - 6573118..6573453 (+) 336 WP_342308567.1 cupredoxin domain-containing protein -
  WLF14_RS30045 (WLF14_30045) - 6573457..6574275 (+) 819 WP_102624893.1 FTR1 family protein -
  WLF14_RS30050 (WLF14_30050) - 6574296..6574826 (+) 531 WP_024078112.1 iron transporter -
  WLF14_RS30055 (WLF14_30055) - 6574940..6575860 (+) 921 WP_024078113.1 hydrogen peroxide-inducible genes activator -
  WLF14_RS30060 (WLF14_30060) recG 6575869..6577944 (+) 2076 WP_024078114.1 ATP-dependent DNA helicase RecG Machinery gene
  WLF14_RS30065 (WLF14_30065) - 6578022..6579422 (+) 1401 WP_069077262.1 aminoacyl-tRNA deacylase and HDOD domain-containing protein -
  WLF14_RS30070 (WLF14_30070) - 6579534..6580909 (+) 1376 Protein_5927 IS3 family transposase -
  WLF14_RS30075 (WLF14_30075) - 6580993..6581367 (-) 375 WP_069077358.1 helicase -
  WLF14_RS30080 (WLF14_30080) - 6581665..6582507 (+) 843 WP_342308569.1 DUF6252 family protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76084.73 Da        Isoelectric Point: 7.1876

>NTDB_id=890978 WLF14_RS30060 WP_024078114.1 6575869..6577944(+) (recG) [Pseudomonas fluorescens strain IMGN2]
MTELSQVPVTALKGVGEAMAEKLAKVGLENLQDVLFHLPLRYQDRTRVVPIGHLRPGQDAVVEGTVSGADVVMGKRRSLV
VRLQDGTGGLSLRFYHFSNAQKEGLKRGTRVRCYGEARPGASGLEIYHPEYRAITGDEPPPVDTTLTPIYPLTEGLTQQR
LRQLCMQTLTMLGPTSLPDWLPQELARDYQLAPLADAIRYLHHPPADADVDELALGHHWAQHRLAFEELLTHQLSQQRLR
ESMRSLRAPAMPKATRLPAQYLANLGFAPTGAQQRVGNEIAYDLSQKEPMLRLIQGDVGAGKTVVAALAALQALEAGYQV
ALMAPTEILAEQHFITFKRWLEPLGLEVAWLAGKLKGKNRAAALEQIAAGAPMVVGTHALFQDEVTFKNLALVIIDEQHR
FGVQQRLALRQKGVGGRMSPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVTDTRRVEVIERVRGACAE
GRQAYWVCTLIEESEELTCQAAETTYEDLTSALGELKVGLIHGRMKPAEKAAVMAEFKAGNLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRQRLGIMRETNDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQALLERWPHHVSPLLDRWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=890978 WLF14_RS30060 WP_024078114.1 6575869..6577944(+) (recG) [Pseudomonas fluorescens strain IMGN2]
ATGACAGAGCTGTCGCAGGTGCCAGTGACGGCACTCAAGGGTGTCGGTGAAGCCATGGCCGAGAAGCTGGCCAAGGTCGG
CCTGGAGAACCTCCAGGACGTGCTGTTCCACCTGCCCCTGCGCTATCAGGATCGCACCCGCGTAGTGCCCATCGGCCACT
TGCGGCCTGGACAGGACGCAGTGGTCGAAGGCACCGTCAGCGGCGCCGACGTGGTCATGGGCAAGCGCCGCAGCCTGGTG
GTGCGCCTGCAGGACGGCACCGGTGGCCTGAGCCTGCGCTTCTACCATTTCAGCAACGCGCAGAAGGAAGGCCTCAAGCG
CGGCACCCGCGTGCGCTGCTACGGCGAGGCGCGGCCCGGCGCTTCTGGCCTGGAAATCTATCATCCGGAATACCGCGCCA
TTACCGGCGACGAGCCACCGCCGGTCGACACCACGCTCACACCGATCTACCCGTTGACCGAAGGCCTGACCCAACAGCGC
CTGCGCCAACTGTGCATGCAGACCCTGACGATGCTCGGCCCCACCAGCCTGCCCGACTGGCTGCCCCAGGAGCTGGCGCG
CGACTACCAGCTGGCGCCGCTGGCTGATGCGATTCGCTACCTGCACCACCCACCGGCCGACGCCGATGTCGACGAATTGG
CCCTGGGTCATCACTGGGCCCAGCATCGCCTGGCGTTCGAAGAGCTGCTGACCCACCAACTGTCCCAACAGCGCCTACGC
GAAAGCATGCGCTCCCTGCGCGCACCAGCGATGCCCAAGGCCACGCGCCTGCCTGCGCAGTACCTGGCCAACCTCGGCTT
TGCGCCGACCGGCGCCCAGCAGCGCGTGGGCAATGAAATCGCCTACGACTTGAGCCAGAAGGAGCCCATGCTGCGGCTGA
TCCAGGGCGACGTGGGCGCAGGCAAGACCGTGGTTGCCGCCCTCGCCGCCTTGCAGGCCCTGGAAGCCGGGTACCAAGTC
GCGCTGATGGCACCCACCGAGATCCTCGCCGAGCAGCACTTCATCACCTTCAAGCGCTGGCTCGAACCCCTGGGCCTGGA
AGTGGCATGGCTGGCGGGCAAGCTCAAGGGCAAGAACCGCGCAGCCGCCCTCGAACAGATCGCCGCCGGCGCACCGATGG
TGGTGGGTACCCACGCGCTGTTCCAGGACGAAGTGACGTTCAAGAACCTGGCCCTGGTGATCATCGACGAACAACACCGT
TTCGGCGTGCAACAACGCCTGGCCCTGCGTCAGAAAGGCGTGGGCGGCCGCATGAGCCCGCACCAACTGATCATGACCGC
CACGCCGATCCCGCGCACCCTGGCCATGAGTGCCTACGCCGACCTCGACACCTCGATCCTTGACGAACTGCCCCCCGGCC
GAACCCCGGTCAACACCGTGCTGGTCACCGACACCCGCCGCGTAGAAGTGATCGAGCGCGTGCGTGGCGCCTGTGCCGAA
GGGCGCCAGGCGTACTGGGTGTGCACGTTGATTGAAGAATCCGAAGAGCTGACCTGCCAGGCCGCCGAGACCACGTACGA
AGACCTCACCAGCGCCCTCGGCGAGCTCAAGGTCGGGCTGATCCACGGCCGCATGAAGCCGGCAGAGAAAGCTGCGGTGA
TGGCCGAATTCAAGGCCGGCAACCTGCAACTGCTGGTGGCCACCACGGTCATCGAAGTCGGTGTGGACGTGCCCAACGCC
AGCCTGATGATCATCGAAAACCCCGAGCGCCTGGGCCTGGCGCAACTGCACCAGTTGCGCGGCCGCGTCGGCCGGGGCAG
CGCCGCCAGCCACTGTGTGCTGCTCTACCACCCGCCACTGTCGCAGATCGGTCGTCAGCGCCTGGGCATCATGCGTGAAA
CCAACGACGGTTTTGTCATTGCCGAGAAAGACCTCGAACTGCGCGGCCCCGGCGAGATGCTCGGTACCCGCCAGACCGGC
CTGCTGCAATTCAAAGTCGCCGACCTGATGCGCGACGCCGACCTGCTGCCCGCTGTGCGCGATGCGGCGCAAGCGCTGCT
GGAGCGCTGGCCGCATCACGTCAGCCCGCTGCTGGATCGCTGGCTTCGCCATGGGCAGCAATACGGCCAAGTGTGA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(12-171)

DEAD/DEAH box helicase (DEAD)

(293-408)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

Helicase conserved C-terminal domain (Helicase_C)

(480-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.592

97.829

0.495
  recG/mmsA Streptococcus pneumoniae R6

40.356

97.54

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.356

97.54

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

39.822

97.395

0.388