Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU74_RS14500 Genome accession   NZ_AP024883
Coordinates   3250349..3250981 (+) Length   210 a.a.
NCBI ID   WP_038179153.1    Uniprot ID   -
Organism   Vibrio mangrovi strain CECT 7927     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3245349..3255981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU74_RS14480 - 3247236..3247742 (+) 507 WP_087482288.1 TIGR02444 family protein -
  OCU74_RS14485 - 3247811..3248803 (+) 993 WP_390623658.1 hydrolase -
  OCU74_RS14490 - 3248903..3249115 (+) 213 WP_087482287.1 YheU family protein -
  OCU74_RS14495 - 3249227..3250096 (+) 870 WP_087482286.1 phosphoribulokinase -
  OCU74_RS14500 crp 3250349..3250981 (+) 633 WP_038179153.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU74_RS14505 - 3251056..3251853 (-) 798 WP_087482285.1 DUF1338 domain-containing protein -
  OCU74_RS14510 astA 3251919..3252941 (-) 1023 WP_087482284.1 arginine N-succinyltransferase -
  OCU74_RS14515 - 3253034..3254245 (-) 1212 WP_087482283.1 aspartate aminotransferase family protein -
  OCU74_RS14520 - 3254499..3255080 (-) 582 WP_087482282.1 aminodeoxychorismate/anthranilate synthase component II -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23508.30 Da        Isoelectric Point: 7.8387

>NTDB_id=89086 OCU74_RS14500 WP_038179153.1 3250349..3250981(+) (crp) [Vibrio mangrovi strain CECT 7927]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLAGQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89086 OCU74_RS14500 WP_038179153.1 3250349..3250981(+) (crp) [Vibrio mangrovi strain CECT 7927]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTTCTTTCACATTGTCACATTCATAAATACCCGTCGAA
AAGTACGCTGATTCATGCAGGCGAAAAAGCGGAAACGCTTTATTACATCGTGAAGGGTTCCGTTGCTGTTCTGATAAAGG
ATGAAGAAGGAAAAGAGATGATCCTTTCTTACCTCAATCAGGGTGACTTTATCGGTGAACTTGGTTTATTCGAAGAAGGT
CAGGAACGAACAGCCTGGGTCAGAGCAAAATCTCCCTGTGAAGTTGCAGAAATTTCCTTCAAGAAATTCCGTCAGTTGAT
TCAGGTAAACCCGGATATTCTGATGCGTCTGGCAGGACAAATGGCAAGCCGCCTTCAGGTAACCAGCCAGAAAGTTGGCG
ATTTGGCCTTCCTGGATGTTACTGGACGTATTGCACAGACATTACTGAATCTGGCAAAACAACCTGATGCAATGACGCAC
CCGGATGGAATGCAGATTAAGATTACCCGTCAGGAGATCGGTCAAATCGTTGGCTGCTCCCGTGAAACCGTTGGCCGCAT
TTTGAAGATGCTCGAAGAGCAAAACCTTATTTCAGCCCACGGAAAAACAATCGTGGTATACGGTACACGATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment