Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   RX583_RS13420 Genome accession   NZ_CP136402
Coordinates   2559073..2559369 (-) Length   98 a.a.
NCBI ID   WP_003230162.1    Uniprot ID   A0A809FGR8
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2554073..2564369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX583_RS13375 (RX583_13375) tasA 2554481..2555266 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  RX583_RS13380 (RX583_13380) sipW 2555330..2555902 (-) 573 WP_003246088.1 signal peptidase I SipW -
  RX583_RS13385 (RX583_13385) tapA 2555886..2556647 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  RX583_RS13390 (RX583_13390) yqzG 2556919..2557245 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  RX583_RS13395 (RX583_13395) spoIITA 2557287..2557466 (-) 180 WP_003230176.1 YqzE family protein -
  RX583_RS13400 (RX583_13400) comGG 2557537..2557911 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  RX583_RS13405 (RX583_13405) comGF 2557912..2558295 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  RX583_RS13410 (RX583_13410) comGE 2558321..2558668 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  RX583_RS13415 (RX583_13415) comGD 2558652..2559083 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  RX583_RS13420 (RX583_13420) comGC 2559073..2559369 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  RX583_RS13425 (RX583_13425) comGB 2559383..2560420 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  RX583_RS13430 (RX583_13430) comGA 2560407..2561477 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  RX583_RS13435 (RX583_13435) corA 2561889..2562842 (-) 954 WP_032723504.1 magnesium transporter CorA -
  RX583_RS13440 (RX583_13440) yqhB 2562985..2564313 (+) 1329 WP_009967730.1 hemolysin family protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10849.74 Da        Isoelectric Point: 6.7083

>NTDB_id=890700 RX583_RS13420 WP_003230162.1 2559073..2559369(-) (comGC) [Bacillus subtilis subsp. subtilis str. 168]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKRIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=890700 RX583_RS13420 WP_003230162.1 2559073..2559369(-) (comGC) [Bacillus subtilis subsp. subtilis str. 168]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATCGTGCTCTTTATTATTTCGATTTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTACAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGACAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGTAAGCGCATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FGR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

100

100

1
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378