Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   RX583_RS13425 Genome accession   NZ_CP136402
Coordinates   2559383..2560420 (-) Length   345 a.a.
NCBI ID   WP_009967727.1    Uniprot ID   A0AAE2SM96
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2554383..2565420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX583_RS13375 (RX583_13375) tasA 2554481..2555266 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  RX583_RS13380 (RX583_13380) sipW 2555330..2555902 (-) 573 WP_003246088.1 signal peptidase I SipW -
  RX583_RS13385 (RX583_13385) tapA 2555886..2556647 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  RX583_RS13390 (RX583_13390) yqzG 2556919..2557245 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  RX583_RS13395 (RX583_13395) spoIITA 2557287..2557466 (-) 180 WP_003230176.1 YqzE family protein -
  RX583_RS13400 (RX583_13400) comGG 2557537..2557911 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  RX583_RS13405 (RX583_13405) comGF 2557912..2558295 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  RX583_RS13410 (RX583_13410) comGE 2558321..2558668 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  RX583_RS13415 (RX583_13415) comGD 2558652..2559083 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  RX583_RS13420 (RX583_13420) comGC 2559073..2559369 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  RX583_RS13425 (RX583_13425) comGB 2559383..2560420 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  RX583_RS13430 (RX583_13430) comGA 2560407..2561477 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  RX583_RS13435 (RX583_13435) corA 2561889..2562842 (-) 954 WP_032723504.1 magnesium transporter CorA -
  RX583_RS13440 (RX583_13440) yqhB 2562985..2564313 (+) 1329 WP_009967730.1 hemolysin family protein -
  RX583_RS13445 (RX583_13445) rsbRD 2564366..2565202 (-) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39762.26 Da        Isoelectric Point: 9.6257

>NTDB_id=890701 RX583_RS13425 WP_009967727.1 2559383..2560420(-) (comGB) [Bacillus subtilis subsp. subtilis str. 168]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSLFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=890701 RX583_RS13425 WP_009967727.1 2559383..2560420(-) (comGB) [Bacillus subtilis subsp. subtilis str. 168]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCTTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

100

93.623

0.936