Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AAFA15_RS16760 Genome accession   NZ_CP151713
Coordinates   3497192..3499237 (+) Length   681 a.a.
NCBI ID   WP_000204958.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain F15-02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3492192..3504237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAFA15_RS16745 (AAFA15_16745) plsB 3492676..3495246 (+) 2571 WP_000045410.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  AAFA15_RS16750 (AAFA15_16750) adeT2 3495290..3496276 (-) 987 WP_000712907.1 putative multidrug efflux protein AdeT2 -
  AAFA15_RS16755 (AAFA15_16755) - 3496356..3497171 (-) 816 WP_000547780.1 NAD-dependent epimerase/dehydratase family protein -
  AAFA15_RS16760 (AAFA15_16760) recG 3497192..3499237 (+) 2046 WP_000204958.1 ATP-dependent DNA helicase RecG Machinery gene
  AAFA15_RS16765 (AAFA15_16765) comF 3499230..3499865 (+) 636 WP_000472261.1 phosphoribosyltransferase family protein Machinery gene
  AAFA15_RS16770 (AAFA15_16770) - 3499868..3500269 (-) 402 WP_000849701.1 NUDIX domain-containing protein -
  AAFA15_RS16775 (AAFA15_16775) - 3500284..3500865 (-) 582 WP_001084310.1 TIGR00730 family Rossman fold protein -
  AAFA15_RS16780 (AAFA15_16780) - 3501023..3502036 (+) 1014 WP_000888321.1 CorA family divalent cation transporter -
  AAFA15_RS16785 (AAFA15_16785) - 3502106..3502393 (-) 288 WP_000250997.1 STAS domain-containing protein -
  AAFA15_RS16790 (AAFA15_16790) - 3502405..3503046 (-) 642 WP_001093907.1 ABC transporter substrate-binding protein -
  AAFA15_RS16795 (AAFA15_16795) - 3503073..3503753 (-) 681 WP_000842362.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 681 a.a.        Molecular weight: 76421.03 Da        Isoelectric Point: 7.9534

>NTDB_id=890539 AAFA15_RS16760 WP_000204958.1 3497192..3499237(+) (recG) [Acinetobacter baumannii strain F15-02]
MTSVHQLQGVGSASAALLEKLNIFTTDDLLFHLPRDYEDRSTIIPMNQLVVGRSYLLEGEVKSVDFPPGKRKSMAALIQD
EFGKVTLRFYHIYKNLTDKIKPGNRLRIFGEVRVGARGLELYHPEIQLINEHTPLPKTQLTAIYPSTDGLTQAKLREYVK
QALKHHSDALPELLPKQYTNGYALKEALHYIHEPPVDANMIQLAQGSHPAQQRLIFEELVAHQISLLTRRAYIRQIASPA
FPSSKVLAKKLLEALPFQMTNAQKRVSKEILSDLKQHQPMLRLVQGDVGAGKTLVAAVAACHALEADWQVALMAPTEILA
EQHYLNFKRWFEPLGIKVAWLSGKQKGKARAHAEQQIKEGHAELIVGTHALFQDNVEFAKLGLVIIDEQHRFGVDQRLAL
RNKGAEQLTPHQLVMTATPIPRTLAMSAYGDLDTSIIDELPPGRTPIQTVTIPLDRREEVLHRIASNCREGKQAYWVCTL
VEQSETLDAQAAEATYQEMKERFPDLNIGLVHGKMKADEKQAVMQAFKNNELQLLIATTVIEVGVDVPNASIMVIENAER
LGLSQLHQLRGRVGRGAKASFCVLLYKPPLSQNGQERLSILRESNDGFVIAEKDLELRGPGELLGTKQTGDMGFRVARLE
RDDHLLSQAHYVAQQVLKDYPEQADALLKRWLPEAPRYAYV

Nucleotide


Download         Length: 2046 bp        

>NTDB_id=890539 AAFA15_RS16760 WP_000204958.1 3497192..3499237(+) (recG) [Acinetobacter baumannii strain F15-02]
ATGACTTCAGTCCATCAGTTACAAGGCGTTGGATCGGCTTCAGCAGCCCTACTCGAAAAACTAAATATTTTTACCACAGA
TGATTTGCTGTTTCATCTGCCCCGTGATTATGAAGATCGCAGTACCATTATTCCTATGAATCAATTGGTAGTTGGTCGTA
GTTATTTACTCGAGGGTGAAGTCAAATCTGTTGATTTCCCTCCAGGTAAACGTAAATCTATGGCCGCATTAATACAAGAT
GAATTTGGTAAGGTGACTTTACGCTTTTATCATATTTATAAAAATTTAACCGACAAAATAAAACCTGGTAACCGTTTACG
TATTTTTGGTGAAGTTCGTGTAGGTGCACGAGGGCTTGAGCTTTATCATCCAGAAATTCAACTTATTAATGAACATACCC
CCCTTCCAAAAACGCAGCTCACAGCAATTTATCCAAGTACCGATGGACTAACACAAGCTAAATTACGCGAATATGTTAAA
CAAGCGTTGAAACATCATAGTGATGCCTTACCCGAGTTACTCCCTAAACAATATACAAATGGGTATGCACTCAAAGAAGC
TTTACATTACATTCATGAGCCACCAGTTGATGCCAATATGATCCAATTGGCTCAAGGCTCTCATCCTGCGCAGCAACGTC
TTATTTTTGAAGAGCTGGTCGCACATCAAATTAGTCTTCTCACTCGACGTGCTTATATTCGACAAATTGCTTCACCTGCT
TTTCCGAGTAGTAAAGTACTTGCAAAAAAACTGCTAGAAGCTTTACCTTTTCAAATGACCAACGCACAAAAACGTGTATC
AAAAGAAATTTTAAGCGACTTAAAACAACATCAACCTATGCTGCGTTTGGTACAAGGTGATGTAGGGGCTGGAAAAACTT
TAGTTGCAGCGGTTGCAGCATGTCATGCATTGGAAGCAGATTGGCAAGTTGCGTTAATGGCACCCACCGAAATTTTAGCA
GAGCAGCATTATTTAAATTTTAAACGCTGGTTTGAACCTTTAGGTATTAAGGTAGCTTGGTTGTCGGGTAAACAAAAAGG
GAAAGCGCGGGCACACGCTGAGCAACAAATTAAAGAAGGCCATGCTGAACTAATTGTGGGTACTCATGCCTTATTTCAAG
ATAACGTTGAATTTGCAAAACTAGGACTCGTGATTATTGATGAACAGCACCGATTCGGGGTCGATCAGCGATTAGCCTTA
CGCAATAAAGGCGCCGAACAGCTCACCCCACATCAACTGGTCATGACTGCAACGCCAATTCCTAGAACACTGGCAATGAG
TGCTTATGGCGATTTAGATACATCGATTATTGATGAATTACCCCCAGGCCGAACTCCAATTCAGACCGTCACGATTCCTC
TAGATCGTCGTGAAGAAGTACTGCATCGAATTGCTTCCAACTGCCGAGAAGGTAAACAAGCCTACTGGGTATGTACTCTG
GTTGAACAGTCCGAAACTTTAGATGCTCAAGCTGCCGAAGCCACCTATCAAGAAATGAAAGAGCGCTTTCCTGATCTTAA
TATTGGTTTGGTTCATGGCAAAATGAAAGCCGATGAAAAACAGGCTGTCATGCAAGCATTTAAAAACAATGAACTACAGC
TGCTAATTGCCACAACTGTTATTGAGGTTGGTGTAGATGTACCCAATGCTTCGATTATGGTCATTGAGAATGCTGAACGA
TTAGGGCTTTCACAGCTACACCAATTACGAGGGCGTGTAGGACGAGGTGCAAAAGCCAGTTTTTGTGTTCTTCTCTATAA
ACCACCACTTTCACAAAATGGGCAAGAAAGACTTTCAATTTTAAGAGAAAGTAATGATGGCTTTGTTATTGCTGAAAAAG
ATCTTGAGCTAAGAGGCCCGGGTGAGTTATTAGGAACAAAACAAACAGGTGATATGGGTTTCCGTGTCGCACGTTTAGAG
CGAGATGATCATTTATTGAGTCAAGCACACTACGTTGCACAACAAGTTCTAAAAGATTACCCTGAGCAAGCTGATGCCTT
ATTGAAGCGCTGGCTTCCCGAAGCTCCTCGATACGCATATGTTTAA

Domains

Predicted by InterProScan.

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(605-663)

DEAD/DEAH box helicase (DEAD)

(261-422)

RecG wedge domain (RecG_wedge)

(7-163)

Helicase conserved C-terminal domain (Helicase_C)

(466-576)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.776

98.238

0.489
  recG/mmsA Streptococcus pneumoniae R6

41.654

97.651

0.407
  recG/mmsA Streptococcus pneumoniae R36A

41.654

97.651

0.407
  recG Bacillus subtilis subsp. subtilis str. 168

38.574

100

0.389