Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   AABK31_RS16660 Genome accession   NZ_AP027679
Coordinates   3406925..3407662 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain PSS-08-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3401925..3412662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK31_RS16645 (VEE22_32150) clpC 3402379..3404952 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  AABK31_RS16650 (VEE22_32160) yfiH 3405082..3405813 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  AABK31_RS16655 (VEE22_32170) rluD 3405810..3406790 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  AABK31_RS16660 (VEE22_32180) comL 3406925..3407662 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  AABK31_RS16665 (VEE22_32190) raiA 3407933..3408274 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  AABK31_RS16670 pheL 3408378..3408425 (+) 48 WP_010723158.1 phe operon leader peptide -
  AABK31_RS16675 (VEE22_32200) pheA 3408524..3409684 (+) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  AABK31_RS16680 (VEE22_32210) tyrA 3409727..3410848 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  AABK31_RS16685 (VEE22_32220) aroF 3410859..3411929 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  AABK31_RS16690 (VEE22_32230) yfiL 3412139..3412504 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=89037 AABK31_RS16660 WP_000197686.1 3406925..3407662(+) (comL) [Escherichia coli strain PSS-08-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=89037 AABK31_RS16660 WP_000197686.1 3406925..3407662(+) (comL) [Escherichia coli strain PSS-08-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment