Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   Pcarn_RS00990 Genome accession   NZ_AP024881
Coordinates   213267..213899 (-) Length   210 a.a.
NCBI ID   WP_261834561.1    Uniprot ID   -
Organism   Vibrio ishigakensis strain C1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 208267..218899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Pcarn_RS00970 - 208663..209874 (+) 1212 WP_261834557.1 aspartate aminotransferase family protein -
  Pcarn_RS00975 astA 209899..210918 (+) 1020 WP_261834558.1 arginine N-succinyltransferase -
  Pcarn_RS00980 astD 210949..212409 (+) 1461 WP_261834559.1 succinylglutamate-semialdehyde dehydrogenase -
  Pcarn_RS00985 - 212425..213216 (+) 792 WP_261834560.1 DUF1338 domain-containing protein -
  Pcarn_RS00990 crp 213267..213899 (-) 633 WP_261834561.1 cAMP-activated global transcriptional regulator CRP Regulator
  Pcarn_RS00995 - 214113..214982 (-) 870 WP_261834562.1 phosphoribulokinase -
  Pcarn_RS01000 - 215006..215227 (-) 222 WP_261834563.1 YheU family protein -
  Pcarn_RS01005 - 215202..216224 (-) 1023 WP_261834564.1 hydrolase -
  Pcarn_RS01010 - 216229..216687 (-) 459 WP_261834565.1 TIGR02444 family protein -
  Pcarn_RS01015 - 216684..218612 (-) 1929 WP_261834566.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23653.46 Da        Isoelectric Point: 7.8383

>NTDB_id=89036 Pcarn_RS00990 WP_261834561.1 213267..213899(-) (crp) [Vibrio ishigakensis strain C1]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMAKRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89036 Pcarn_RS00990 WP_261834561.1 213267..213899(-) (crp) [Vibrio ishigakensis strain C1]
ATGGTTTTAGGTAAACCTCAAACGGATCCAACATTAGAATGGTTTTTGTCCCACTGTCATATCCACAAATACCCTTCTAA
AAGTACGCTGATCCACGCTGGTGAAAAAGCGGAAACTTTGTATTACATCGTCAAAGGCTCTGTTGCCGTTCTAATTAAGG
ACGAAGAAGGTAAAGAAATGATTCTTTCTTACCTTAACCAAGGCGACTTCATCGGTGAGCTAGGTCTTTTTGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGTGCAAAATCACCTTGTGAAGTTGCAGAGATCTCATTCAAGAAGTTCCGTCAGCTAAT
CCAAGTGAACCCAGACATCCTAATGCGTCTGTCTTCACAAATGGCGAAACGCCTACAAGTAACTAGCCAAAAAGTTGGTG
ACTTGGCGTTCCTAGACGTTACTGGTCGTATCGCACAGACTCTACTGAATCTTGCAAAACAACCTGACGCTATGACGCAC
CCAGATGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGCCAAATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTTATCTCAGCTCACGGTAAGACTATCGTGGTATATGGTACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment