Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU48_RS12145 Genome accession   NZ_AP024878
Coordinates   2630532..2631164 (+) Length   210 a.a.
NCBI ID   WP_017029447.1    Uniprot ID   V5FDW9
Organism   Vibrio inusitatus strain LMG 23434     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2625532..2636164
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU48_RS12120 - 2625774..2627693 (+) 1920 WP_141345678.1 ABC transporter ATP-binding protein -
  OCU48_RS12125 - 2627690..2628154 (+) 465 WP_141345677.1 TIGR02444 family protein -
  OCU48_RS12130 - 2628154..2629134 (+) 981 WP_208727150.1 hydrolase -
  OCU48_RS12135 - 2629152..2629373 (+) 222 WP_141345675.1 YheU family protein -
  OCU48_RS12140 - 2629440..2630309 (+) 870 WP_017029448.1 phosphoribulokinase -
  OCU48_RS12145 crp 2630532..2631164 (+) 633 WP_017029447.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU48_RS12150 - 2631245..2632036 (-) 792 WP_141345674.1 DUF1338 domain-containing protein -
  OCU48_RS12155 astD 2632055..2633518 (-) 1464 WP_141345673.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU48_RS12160 astA 2633542..2634561 (-) 1020 WP_141345672.1 arginine N-succinyltransferase -
  OCU48_RS12165 - 2634585..2635793 (-) 1209 WP_141345671.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23625.36 Da        Isoelectric Point: 7.4009

>NTDB_id=89026 OCU48_RS12145 WP_017029447.1 2630532..2631164(+) (crp) [Vibrio inusitatus strain LMG 23434]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEDD
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=89026 OCU48_RS12145 WP_017029447.1 2630532..2631164(+) (crp) [Vibrio inusitatus strain LMG 23434]
ATGGTTTTAGGTAAACCTCAAACAGATCCAACGTTAGAATGGTTTTTGTCACATTGCCACATCCACAAATACCCTTCAAA
AAGCACACTGATCCATGCTGGTGAAAAAGCAGAAACTCTTTACTACATCGTTAAAGGTTCTGTAGCCGTACTGATCAAAG
ATGAAGAAGGGAAAGAAATGATTCTTTCTTACCTAAACCAAGGTGATTTCATCGGTGAGTTAGGCCTTTTTGAAGATGAT
CAAGAGCGTACTGCTTGGGTACGTGCGAAATCTCCTTGTGAGGTTGCTGAAATCTCATTTAAAAAATTCCGTCAGCTTAT
TCAGGTTAACCCAGACATCCTAATGCGTCTTTCTTCGCAAATGGCTAATCGTCTGCAAGTAACTAGCCAGAAAGTAGGTG
ATCTTGCGTTCCTAGACGTTACTGGTCGTATCGCGCAAACTCTACTTAACCTAGCGAAGCAACCTGATGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGTCAGATTGTCGGTTGTTCTCGTGAGACAGTAGGCCGTAT
CTTAAAGATGCTTGAAGAGCAGAATCTAATCTCTGCACACGGTAAAACTATTGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5FDW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

74.02

97.143

0.719
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment