Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   RX139_RS02135 Genome accession   NZ_CP136346
Coordinates   430946..431419 (+) Length   157 a.a.
NCBI ID   WP_002358253.1    Uniprot ID   -
Organism   Enterococcus faecalis strain ES-1276     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 425946..436419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX139_RS02110 (RX139_02110) - 429338..429604 (+) 267 WP_002358475.1 hypothetical protein -
  RX139_RS02115 (RX139_02115) - 429619..430008 (+) 390 WP_002358476.1 hypothetical protein -
  RX139_RS02120 (RX139_02120) - 430026..430361 (+) 336 WP_002358477.1 thioredoxin fold domain-containing protein -
  RX139_RS02125 (RX139_02125) - 430365..430778 (+) 414 WP_002358478.1 hypothetical protein -
  RX139_RS02130 (RX139_02130) - 430792..430938 (+) 147 WP_010706732.1 hypothetical protein -
  RX139_RS02135 (RX139_02135) ssb 430946..431419 (+) 474 WP_002358253.1 single-stranded DNA-binding protein Machinery gene
  RX139_RS02140 (RX139_02140) - 431452..431874 (+) 423 WP_002358479.1 hypothetical protein -
  RX139_RS02145 (RX139_02145) - 431867..432256 (+) 390 WP_010706731.1 hypothetical protein -
  RX139_RS02150 (RX139_02150) - 432362..433698 (+) 1337 Protein_403 hypothetical protein -
  RX139_RS02155 (RX139_02155) cylR2 434144..434344 (-) 201 WP_002358483.1 cytolysin regulator CylR2 -
  RX139_RS02160 (RX139_02160) cylL-L 434748..434954 (+) 207 WP_002358485.1 lanthipeptide cytolysin subunit CylL-L -
  RX139_RS02165 (RX139_02165) cylL-S 434988..435179 (+) 192 WP_002358181.1 lanthipeptide cytolysin subunit CylL-S -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17491.36 Da        Isoelectric Point: 4.9225

>NTDB_id=890155 RX139_RS02135 WP_002358253.1 430946..431419(+) (ssb) [Enterococcus faecalis strain ES-1276]
MINNVTLVGRLANDVDLRYTSSGIAVGQFRLAVNRNFTNQSGEREADFISCAIWRKAAESLANYARKGSLLGITGRIQTR
NYDNQQGQRVYVTEVIVENFQLLESKEISEQRRANASTPVTNGQQANNQQQTPLPDPLDPFSKESSPVNISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=890155 RX139_RS02135 WP_002358253.1 430946..431419(+) (ssb) [Enterococcus faecalis strain ES-1276]
ATGATTAATAATGTTACGTTAGTTGGGCGTTTAGCTAATGATGTGGATTTAAGGTATACATCAAGTGGGATTGCAGTTGG
ACAATTTCGTTTAGCAGTCAATCGGAATTTTACCAATCAATCTGGGGAGCGAGAAGCGGATTTTATTAGTTGTGCGATAT
GGCGCAAAGCGGCAGAATCGCTTGCTAATTACGCACGTAAAGGTAGCTTACTTGGAATTACTGGTCGTATTCAGACGCGA
AACTATGATAACCAGCAAGGACAACGTGTTTATGTGACAGAAGTGATTGTAGAAAATTTTCAATTGTTAGAATCCAAAGA
AATAAGCGAACAACGTCGGGCGAATGCTTCTACGCCTGTAACCAATGGGCAGCAGGCTAATAACCAACAACAGACACCAC
TTCCTGATCCGCTTGATCCTTTCTCAAAGGAGTCTAGCCCAGTAAATATTTCGGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.575

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

67.516

0.382