Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RX793_RS12190 Genome accession   NZ_CP136263
Coordinates   2555318..2556007 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain 0039     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2550318..2561007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS12170 (RX793_12165) - 2550823..2551899 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  RX793_RS12175 (RX793_12170) - 2551989..2553203 (-) 1215 WP_024085868.1 LCP family protein -
  RX793_RS12180 (RX793_12175) - 2553208..2553855 (-) 648 WP_003151384.1 YigZ family protein -
  RX793_RS12185 (RX793_12180) degS 2554078..2555241 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  RX793_RS12190 (RX793_12185) degU 2555318..2556007 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RX793_RS12195 (RX793_12190) - 2556105..2556953 (+) 849 WP_024085866.1 DegV family protein -
  RX793_RS12200 (RX793_12195) comFA 2557061..2558446 (+) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  RX793_RS12205 (RX793_12200) - 2558504..2558788 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  RX793_RS12210 (RX793_12205) comFC 2558794..2559483 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  RX793_RS12215 (RX793_12210) - 2559557..2559976 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  RX793_RS12220 (RX793_12215) flgM 2560046..2560312 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RX793_RS12225 (RX793_12220) - 2560327..2560809 (+) 483 WP_024085863.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=889990 RX793_RS12190 WP_003219701.1 2555318..2556007(+) (degU) [Bacillus velezensis strain 0039]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=889990 RX793_RS12190 WP_003219701.1 2555318..2556007(+) (degU) [Bacillus velezensis strain 0039]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1