Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RX793_RS12210 Genome accession   NZ_CP136263
Coordinates   2558794..2559483 (+) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain 0039     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2553794..2564483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RX793_RS12185 (RX793_12180) degS 2554078..2555241 (+) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  RX793_RS12190 (RX793_12185) degU 2555318..2556007 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RX793_RS12195 (RX793_12190) - 2556105..2556953 (+) 849 WP_024085866.1 DegV family protein -
  RX793_RS12200 (RX793_12195) comFA 2557061..2558446 (+) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  RX793_RS12205 (RX793_12200) - 2558504..2558788 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  RX793_RS12210 (RX793_12205) comFC 2558794..2559483 (+) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  RX793_RS12215 (RX793_12210) - 2559557..2559976 (+) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  RX793_RS12220 (RX793_12215) flgM 2560046..2560312 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  RX793_RS12225 (RX793_12220) - 2560327..2560809 (+) 483 WP_024085863.1 flagellar protein FlgN -
  RX793_RS12230 (RX793_12225) flgK 2560825..2562342 (+) 1518 WP_024085862.1 flagellar hook-associated protein FlgK -
  RX793_RS12235 (RX793_12230) flgL 2562354..2563271 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  RX793_RS12240 (RX793_12235) - 2563362..2563931 (+) 570 WP_024085861.1 DUF6470 family protein -
  RX793_RS12245 (RX793_12240) fliW 2563961..2564392 (+) 432 WP_003151399.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=889992 RX793_RS12210 WP_196616643.1 2558794..2559483(+) (comFC) [Bacillus velezensis strain 0039]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=889992 RX793_RS12210 WP_196616643.1 2558794..2559483(+) (comFC) [Bacillus velezensis strain 0039]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGTAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGTTTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603