Detailed information NTG0889973

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: RX793_RS07565
• Genome accession: NZ_CP136263
• Coordinates: 1616285..1617433 (-)
• Length: 382 a.a.
• NCBI ID: WP_003156336.1
• Uniprot ID: -
• Organism: Bacillus velezensis strain 0039
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 1611285..1622433

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RX793_RS07535 (RX793_07530)	-	1611421..1612179 (-)	759	WP_003156330.1	ABC transporter ATP-binding protein	-
RX793_RS07540 (RX793_07535)	-	1612173..1613120 (-)	948	WP_003156331.1	iron chelate uptake ABC transporter family permease subunit	-
RX793_RS07545 (RX793_07540)	ceuB	1613110..1614063 (-)	954	WP_003156332.1	ABC transporter permease	Machinery gene
RX793_RS07550 (RX793_07545)	-	1614478..1615842 (+)	1365	WP_003156333.1	aspartate kinase	-
RX793_RS07555 (RX793_07550)	-	1615922..1616032 (+)	111	WP_369719092.1	YjcZ family sporulation protein	-
RX793_RS07560 (RX793_07555)	phrC	1616182..1616301 (-)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
RX793_RS07565 (RX793_07560)	rapC	1616285..1617433 (-)	1149	WP_003156336.1	Rap family tetratricopeptide repeat protein	Regulator
RX793_RS07570 (RX793_07565)	-	1617586..1619019 (-)	1434	WP_161625271.1	sensor histidine kinase	-
RX793_RS07575 (RX793_07570)	-	1619006..1619689 (-)	684	WP_024084885.1	response regulator transcription factor	-
RX793_RS07580 (RX793_07575)	-	1619902..1621338 (+)	1437	WP_024084884.1	ABC transporter permease	-
RX793_RS07585 (RX793_07580)	-	1621353..1622036 (+)	684	WP_015388709.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45521.82 Da
• Isoelectric Point: 5.0732

>NTDB_id=889973 RX793_RS07565 WP_003156336.1 1616285..1617433(-) (rapC) [Bacillus velezensis strain 0039]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=889973 RX793_RS07565 WP_003156336.1 1616285..1617433(-) (rapC) [Bacillus velezensis strain 0039]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACGTATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCAGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTTTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
CCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAGATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568