Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   RW107_RS19900 Genome accession   NZ_CP136257
Coordinates   3852930..3853049 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain A9     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3847930..3858049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW107_RS19875 (RW107_19875) albG 3848094..3848795 (+) 702 WP_041850410.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  RW107_RS19880 (RW107_19880) ywhL 3848801..3850177 (-) 1377 WP_128441926.1 YncE family protein -
  RW107_RS19885 (RW107_19885) ywhK 3850216..3851571 (-) 1356 WP_015250986.1 YncE family protein -
  RW107_RS19890 (RW107_19890) - 3851568..3851798 (-) 231 WP_069703618.1 hypothetical protein -
  RW107_RS19895 (RW107_19895) rapF 3851801..3852946 (+) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  RW107_RS19900 (RW107_19900) phrF 3852930..3853049 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  RW107_RS19905 (RW107_19905) - 3853119..3853283 (-) 165 WP_248719425.1 hypothetical protein -
  RW107_RS19910 (RW107_19910) - 3853204..3853613 (+) 410 Protein_3873 YbaK/EbsC family protein -
  RW107_RS19915 (RW107_19915) speB 3853644..3854516 (-) 873 WP_003227545.1 agmatinase -
  RW107_RS19920 (RW107_19920) speE 3854577..3855407 (-) 831 WP_003227543.1 spermidine synthase -
  RW107_RS19925 (RW107_19925) pbpG 3855610..3857685 (+) 2076 WP_038427996.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=889921 RW107_RS19900 WP_009968329.1 3852930..3853049(+) (phrF) [Bacillus subtilis strain A9]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=889921 RW107_RS19900 WP_009968329.1 3852930..3853049(+) (phrF) [Bacillus subtilis strain A9]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487