Detailed information NTG0889920

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: RW107_RS19895
• Genome accession: NZ_CP136257
• Coordinates: 3851801..3852946 (+)
• Length: 381 a.a.
• NCBI ID: WP_029318693.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain A9
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3846801..3857946

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RW107_RS19870 (RW107_19870)	albF	3846817..3848097 (+)	1281	WP_041850411.1	pitrilysin family protein	-
RW107_RS19875 (RW107_19875)	albG	3848094..3848795 (+)	702	WP_041850410.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
RW107_RS19880 (RW107_19880)	ywhL	3848801..3850177 (-)	1377	WP_128441926.1	YncE family protein	-
RW107_RS19885 (RW107_19885)	ywhK	3850216..3851571 (-)	1356	WP_015250986.1	YncE family protein	-
RW107_RS19890 (RW107_19890)	-	3851568..3851798 (-)	231	WP_069703618.1	hypothetical protein	-
RW107_RS19895 (RW107_19895)	rapF	3851801..3852946 (+)	1146	WP_029318693.1	response regulator aspartate phosphatase RapF	Regulator
RW107_RS19900 (RW107_19900)	phrF	3852930..3853049 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
RW107_RS19905 (RW107_19905)	-	3853119..3853283 (-)	165	WP_248719425.1	hypothetical protein	-
RW107_RS19910 (RW107_19910)	-	3853204..3853613 (+)	410	Protein_3873	YbaK/EbsC family protein	-
RW107_RS19915 (RW107_19915)	speB	3853644..3854516 (-)	873	WP_003227545.1	agmatinase	-
RW107_RS19920 (RW107_19920)	speE	3854577..3855407 (-)	831	WP_003227543.1	spermidine synthase	-
RW107_RS19925 (RW107_19925)	pbpG	3855610..3857685 (+)	2076	WP_038427996.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45594.05 Da
• Isoelectric Point: 5.0624

>NTDB_id=889920 RW107_RS19895 WP_029318693.1 3851801..3852946(+) (rapF) [Bacillus subtilis strain A9]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=889920 RW107_RS19895 WP_029318693.1 3851801..3852946(+) (rapF) [Bacillus subtilis strain A9]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACATATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	98.95	100	0.99
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572