Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU45_RS01485 Genome accession   NZ_AP024873
Coordinates   334685..335317 (-) Length   210 a.a.
NCBI ID   WP_038179153.1    Uniprot ID   -
Organism   Vibrio gazogenes strain ATCC 29988     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 329685..340317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU45_RS01465 - 330580..331158 (+) 579 WP_072959124.1 aminodeoxychorismate/anthranilate synthase component II -
  OCU45_RS01470 - 331423..332634 (+) 1212 WP_072959120.1 aspartate aminotransferase family protein -
  OCU45_RS01475 astA 332729..333751 (+) 1023 WP_072959117.1 arginine N-succinyltransferase -
  OCU45_RS01480 - 333816..334610 (+) 795 WP_072959114.1 DUF1338 domain-containing protein -
  OCU45_RS01485 crp 334685..335317 (-) 633 WP_038179153.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU45_RS01490 - 335602..336471 (-) 870 WP_072959112.1 phosphoribulokinase -
  OCU45_RS01495 - 336591..336803 (-) 213 WP_021019630.1 YheU family protein -
  OCU45_RS01500 - 336929..337921 (-) 993 WP_083571263.1 hydrolase -
  OCU45_RS01505 - 337957..338445 (-) 489 WP_072959108.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23508.30 Da        Isoelectric Point: 7.8387

>NTDB_id=88978 OCU45_RS01485 WP_038179153.1 334685..335317(-) (crp) [Vibrio gazogenes strain ATCC 29988]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLAGQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=88978 OCU45_RS01485 WP_038179153.1 334685..335317(-) (crp) [Vibrio gazogenes strain ATCC 29988]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTTCTTTCACATTGTCACATACATAAATACCCTTCAAA
GAGTACGCTGATTCATGCAGGCGAAAAAGCGGAAACGCTTTATTACATCGTGAAGGGATCTGTTGCAGTTCTGATCAAGG
ATGAAGAAGGAAAAGAGATGATCCTTTCCTATCTCAATCAGGGTGATTTCATCGGTGAACTTGGTTTATTCGAAGAAGGT
CAAGAGCGGACAGCTTGGGTCAGAGCGAAATCTCCCTGCGAAGTTGCAGAAATTTCCTTCAAAAAATTCCGTCAGTTAAT
TCAGGTTAACCCAGACATTTTAATGCGTTTGGCAGGACAGATGGCAAGCCGCCTTCAAGTCACCAGCCAAAAAGTCGGTG
ATCTGGCTTTTCTGGATGTGACTGGTCGTATTGCCCAGACACTGTTGAATCTGGCAAAACAACCTGATGCAATGACGCAT
CCAGACGGAATGCAAATCAAGATTACTCGTCAGGAGATCGGCCAGATTGTCGGCTGTTCTCGTGAAACCGTCGGTCGCAT
TTTGAAAATGCTTGAAGAGCAGAACCTTATTTCAGCCCACGGAAAAACAATCGTTGTTTACGGTACCAGATGA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment