Detailed information NTG0889749

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: RVY87_RS17920
• Genome accession: NZ_CP136240
• Coordinates: 3947497..3948867 (+)
• Length: 456 a.a.
• NCBI ID: WP_055099444.1
• Uniprot ID: -
• Organism: Alloalcanivorax xenomutans strain HF-10
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3942497..3953867

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
RVY87_RS17900 (RVY87_17900)	-	3942772..3943587 (+)	816	WP_022996657.1	outer membrane protein assembly factor BamD	-
RVY87_RS17905 (RVY87_17905)	-	3943640..3945265 (-)	1626	WP_026949554.1	NAD+ synthase	-
RVY87_RS17910 (RVY87_17910)	-	3945631..3945891 (+)	261	WP_022996659.1	PP0621 family protein	-
RVY87_RS17915 (RVY87_17915)	-	3945911..3947494 (+)	1584	WP_022996660.1	ATP-binding protein	-
RVY87_RS17920 (RVY87_17920)	pilR	3947497..3948867 (+)	1371	WP_055099444.1	sigma-54 dependent transcriptional regulator	Regulator
RVY87_RS17925 (RVY87_17925)	-	3948840..3949925 (-)	1086	WP_233917703.1	FAD-dependent oxidoreductase	-
RVY87_RS17930 (RVY87_17930)	-	3950054..3950542 (+)	489	WP_022996663.1	GspH/FimT family protein	-
RVY87_RS17935 (RVY87_17935)	-	3950572..3950991 (-)	420	WP_055099445.1	type IV pilin protein	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 50375.49 Da
• Isoelectric Point: 5.6549

>NTDB_id=889749 RVY87_RS17920 WP_055099444.1 3947497..3948867(+) (pilR) [Alloalcanivorax xenomutans strain HF-10]
MNDIIPRVLVVDDEADLRELLVITLGRMKLEATAADSLAAAQRLLDRDTFHLCLTDMNLGDGSGLQLIRYAAEKAPDMPI
AVLTAFGNMETATEAMKLGAYDFIAKPVSLDRLRQLIQDGLGISRHGAANGGEDDGLIGQSPAMQHLRRQIRKLARSQAP
IYISGESGSGKEKVARLIHTLGPRGDHPFVAVNCGAIPSELMESEFFGHRKGSFTGAVEDRKGLFREADGGTLFLDEVAD
LPLHMQVKLLRAIQEKTVRPVGESREFSVNLRILCATHKDLSEEMQAGRFRQDLYYRLNVIEAHVPPLRERLEDVPALVE
HILSRLGIAWDTTPPTLSNGTLAALRDYPFPGNVRELENVLERAMTLCDGNVIEPAHLRLPSQASSEAPSQGGSRDPALP
LEDYLQDIERQEILKALDATHWNRTAAAKKLGMTFRSLRYRLKKLALDQEEEEGSA

Nucleotide

• Length: 1371 bp

>NTDB_id=889749 RVY87_RS17920 WP_055099444.1 3947497..3948867(+) (pilR) [Alloalcanivorax xenomutans strain HF-10]
ATGAATGACATAATTCCGCGTGTTTTGGTTGTGGACGACGAAGCGGACCTGAGAGAACTTCTGGTCATCACCCTCGGGCG
GATGAAATTGGAAGCAACGGCCGCGGACTCCCTGGCCGCCGCCCAGCGGCTGCTGGATCGCGACACCTTTCATCTTTGCC
TGACCGATATGAACCTGGGCGATGGCTCCGGTTTACAGCTGATCCGCTACGCGGCGGAGAAGGCGCCAGACATGCCCATC
GCGGTACTCACCGCATTCGGCAACATGGAGACCGCCACCGAAGCGATGAAACTGGGGGCCTACGATTTCATCGCCAAACC
CGTCTCGCTGGACCGGCTGCGGCAGTTGATTCAGGACGGCCTCGGCATCAGCCGCCATGGCGCCGCCAACGGCGGCGAGG
ACGATGGTCTGATTGGCCAGTCGCCGGCCATGCAGCATTTGCGACGGCAAATCCGCAAACTGGCACGCAGCCAGGCGCCA
ATCTACATCAGCGGCGAATCCGGCAGCGGCAAGGAAAAAGTGGCGCGTCTGATTCACACGCTGGGGCCGCGCGGTGACCA
CCCTTTCGTTGCGGTGAACTGCGGCGCCATCCCTTCCGAACTGATGGAAAGTGAATTTTTCGGTCACCGCAAAGGCAGTT
TCACCGGCGCCGTGGAAGACCGCAAAGGCCTGTTCCGGGAAGCGGACGGAGGCACCCTGTTTCTTGATGAAGTAGCGGAT
CTGCCTCTGCACATGCAGGTCAAGCTGCTGCGTGCGATTCAGGAGAAAACCGTGCGGCCGGTGGGCGAGTCACGGGAGTT
CAGCGTCAACCTGCGTATTCTTTGCGCCACCCACAAGGATCTCAGCGAGGAAATGCAGGCGGGCCGCTTTCGTCAGGACC
TCTACTACCGGCTGAATGTCATCGAGGCACACGTGCCGCCGCTGCGCGAGCGCCTGGAGGACGTTCCGGCGCTGGTTGAG
CATATCCTCTCCCGGCTCGGCATCGCCTGGGATACCACGCCGCCCACGCTCAGTAACGGTACTCTGGCGGCGCTGCGCGA
CTATCCGTTTCCCGGCAACGTGCGAGAGCTGGAAAACGTACTGGAGCGGGCCATGACCCTGTGTGATGGCAACGTTATCG
AACCGGCGCATCTGCGGCTACCCAGCCAGGCCAGCAGCGAAGCACCCAGCCAGGGCGGCAGCCGGGATCCGGCTTTGCCA
TTGGAGGATTATCTACAGGACATCGAGCGGCAGGAAATTCTCAAAGCGCTGGATGCCACCCACTGGAATCGCACCGCCGC
CGCCAAGAAGCTGGGTATGACGTTTCGCTCATTGCGTTACCGCTTGAAGAAACTGGCCCTGGATCAGGAAGAAGAGGAAG
GCAGCGCGTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (8-117)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.883	97.807	0.605
pilR	Acinetobacter baumannii strain A118	49.356	100	0.504
luxO	Vibrio cholerae strain A1552	41.379	89.035	0.368