Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   RVY87_RS00350 Genome accession   NZ_CP136240
Coordinates   76137..76520 (-) Length   127 a.a.
NCBI ID   WP_014992438.1    Uniprot ID   A0A9Q3ZGJ2
Organism   Alloalcanivorax xenomutans strain HF-10     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 71137..81520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RVY87_RS00330 (RVY87_00330) - 72022..72897 (-) 876 WP_022997458.1 CheR family methyltransferase -
  RVY87_RS00335 (RVY87_00335) - 72897..74915 (-) 2019 WP_316309180.1 methyl-accepting chemotaxis protein -
  RVY87_RS00340 (RVY87_00340) - 75159..75707 (-) 549 WP_022997460.1 chemotaxis protein CheW -
  RVY87_RS00345 (RVY87_00345) pilH 75722..76090 (-) 369 WP_022997461.1 twitching motility response regulator PilH -
  RVY87_RS00350 (RVY87_00350) pilG 76137..76520 (-) 384 WP_014992438.1 twitching motility response regulator PilG Regulator
  RVY87_RS00355 (RVY87_00355) gshB 76753..77706 (+) 954 WP_080530118.1 glutathione synthase -
  RVY87_RS00360 (RVY87_00360) - 77797..78663 (+) 867 WP_022997463.1 TonB family protein -
  RVY87_RS00365 (RVY87_00365) - 78717..79280 (+) 564 WP_022997464.1 YqgE/AlgH family protein -
  RVY87_RS00370 (RVY87_00370) ruvX 79280..79684 (+) 405 WP_026948831.1 Holliday junction resolvase RuvX -
  RVY87_RS00375 (RVY87_00375) - 79734..80336 (-) 603 WP_022997466.1 DUF2780 domain-containing protein -
  RVY87_RS00380 (RVY87_00380) pyrR 80488..81021 (+) 534 WP_026948832.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14071.38 Da        Isoelectric Point: 8.4918

>NTDB_id=889733 RVY87_RS00350 WP_014992438.1 76137..76520(-) (pilG) [Alloalcanivorax xenomutans strain HF-10]
MTDNFQDLKVMVIDDSKTIRRTAETLLKKAGCEVITATDGFDALAKIADSKPRIIFVDIMMPRLDGYQTCALIKNNSAFK
QTPVIMLSSKDGLFDKAKGRIVGSDEYLTKPFSKDELLGAIRQHISA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=889733 RVY87_RS00350 WP_014992438.1 76137..76520(-) (pilG) [Alloalcanivorax xenomutans strain HF-10]
ATGACTGACAATTTTCAAGACCTCAAGGTCATGGTGATCGACGATTCGAAAACCATTCGTCGTACCGCCGAGACCTTGTT
GAAGAAAGCGGGTTGTGAGGTGATTACCGCCACCGACGGGTTCGATGCGCTTGCCAAGATTGCCGACAGCAAGCCGCGAA
TCATTTTCGTGGACATCATGATGCCCCGGCTGGATGGCTATCAGACGTGCGCCTTGATCAAGAACAACAGCGCGTTCAAG
CAGACACCGGTGATCATGCTCTCCTCGAAGGACGGCTTGTTCGATAAGGCCAAGGGCCGCATCGTGGGATCCGATGAATA
CCTGACCAAGCCTTTTTCCAAGGACGAGCTACTGGGCGCCATCCGTCAGCATATCAGCGCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

78.74

100

0.787
  vicR Streptococcus mutans UA159

41.88

92.126

0.386
  pilH Synechocystis sp. PCC 6803

41.228

89.764

0.37