Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU28_RS00880 Genome accession   NZ_AP024871
Coordinates   188129..188761 (-) Length   210 a.a.
NCBI ID   WP_017036097.1    Uniprot ID   A0A7Y4ALD5
Organism   Vibrio gallicus strain CIP 107863     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 183129..193761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU28_RS00860 - 183505..184716 (+) 1212 WP_261816503.1 aspartate aminotransferase family protein -
  OCU28_RS00865 astA 184740..185759 (+) 1020 WP_261816504.1 arginine N-succinyltransferase -
  OCU28_RS00870 astD 185788..187248 (+) 1461 WP_261816505.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU28_RS00875 - 187264..188055 (+) 792 WP_261816506.1 DUF1338 domain-containing protein -
  OCU28_RS00880 crp 188129..188761 (-) 633 WP_017036097.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU28_RS00885 - 188976..189845 (-) 870 WP_261816507.1 phosphoribulokinase -
  OCU28_RS00890 - 189868..190089 (-) 222 WP_261816508.1 YheU family protein -
  OCU28_RS00895 - 190103..191086 (-) 984 WP_261816509.1 hydrolase -
  OCU28_RS00900 - 191076..191546 (-) 471 WP_261816510.1 TIGR02444 family protein -
  OCU28_RS00905 - 191552..193471 (-) 1920 WP_261816511.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.39 Da        Isoelectric Point: 7.4009

>NTDB_id=88947 OCU28_RS00880 WP_017036097.1 188129..188761(-) (crp) [Vibrio gallicus strain CIP 107863]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=88947 OCU28_RS00880 WP_017036097.1 188129..188761(-) (crp) [Vibrio gallicus strain CIP 107863]
ATGGTTTTAGGTAAACCTCAAACAGATCCAACTTTAGAATGGTTTTTGTCTCATTGTCATATCCACAAATACCCTTCAAA
GAGCACCCTGATCCACGCTGGTGAAAAAGCCGAAACTTTGTATTACATCGTTAAAGGCTCAGTCGCTGTTCTAATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTTATTGGTGAGCTAGGTTTATTTGAAGAAGAC
CAAGAGCGTACTGCTTGGGTTCGTGCTAAATCACCATGTGAAGTAGCTGAAATCTCATTCAAAAAATTCCGTCAACTTAT
CCAAGTAAATCCTGACATCCTAATGCGTCTTTCTTCGCAAATGGCAAACCGTTTACAGGTTACTAGCCAAAAAGTAGGCG
ATTTAGCATTCTTAGATGTTACTGGTCGTATTGCACAGACTCTACTGAATCTTGCAAAACAACCAGATGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGTCAGATTGTTGGCTGTTCTCGTGAGACTGTAGGTCGTAT
CTTGAAAATGCTAGAAGAGCAGAATCTAATCTCTGCACACGGCAAAACTATCGTAGTTTATGGTACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y4ALD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

74.51

97.143

0.724
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment