Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RW078_RS15625 Genome accession   NZ_CP136178
Coordinates   3309974..3310384 (-) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain ABO21-A045     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3304974..3315384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RW078_RS15595 (RW078_15595) - 3305060..3305329 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RW078_RS15600 (RW078_15600) rapZ 3305326..3306177 (-) 852 WP_000821671.1 RNase adapter RapZ -
  RW078_RS15605 (RW078_15605) panC 3306200..3307048 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RW078_RS15610 (RW078_15610) panB 3307052..3307861 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RW078_RS15615 (RW078_15615) folK 3307907..3308389 (-) 483 WP_000219214.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RW078_RS15620 (RW078_15620) pcnB 3308386..3309849 (-) 1464 WP_317858822.1 polynucleotide adenylyltransferase PcnB -
  RW078_RS15625 (RW078_15625) comEA 3309974..3310384 (-) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  RW078_RS15630 (RW078_15630) mazG 3310353..3311159 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  RW078_RS15635 (RW078_15635) - 3311271..3312044 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  RW078_RS15640 (RW078_15640) - 3312089..3314395 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=889428 RW078_RS15625 WP_002041921.1 3309974..3310384(-) (comEA) [Acinetobacter baumannii strain ABO21-A045]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=889428 RW078_RS15625 WP_002041921.1 3309974..3310384(-) (comEA) [Acinetobacter baumannii strain ABO21-A045]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCAGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382