Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU46_RS12790 Genome accession   NZ_AP024866
Coordinates   2772898..2773530 (+) Length   210 a.a.
NCBI ID   WP_141271812.1    Uniprot ID   A0A4Y3IRJ1
Organism   Vibrio comitans strain LMG 23416     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2767898..2778530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU46_RS12765 - 2768140..2770059 (+) 1920 WP_141271816.1 ABC transporter ATP-binding protein -
  OCU46_RS12770 - 2770056..2770520 (+) 465 WP_141271815.1 TIGR02444 family protein -
  OCU46_RS12775 - 2770520..2771500 (+) 981 WP_371858842.1 hydrolase -
  OCU46_RS12780 - 2771518..2771739 (+) 222 WP_141271813.1 YheU family protein -
  OCU46_RS12785 - 2771806..2772675 (+) 870 WP_017031392.1 phosphoribulokinase -
  OCU46_RS12790 crp 2772898..2773530 (+) 633 WP_141271812.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU46_RS12795 - 2773602..2774393 (-) 792 WP_141271811.1 DUF1338 domain-containing protein -
  OCU46_RS12800 astD 2774412..2775875 (-) 1464 WP_141271810.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU46_RS12805 astA 2775899..2776918 (-) 1020 WP_141271809.1 arginine N-succinyltransferase -
  OCU46_RS12810 - 2776942..2778150 (-) 1209 WP_141271808.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23639.44 Da        Isoelectric Point: 7.8383

>NTDB_id=88935 OCU46_RS12790 WP_141271812.1 2772898..2773530(+) (crp) [Vibrio comitans strain LMG 23416]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEDD
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMAKRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=88935 OCU46_RS12790 WP_141271812.1 2772898..2773530(+) (crp) [Vibrio comitans strain LMG 23416]
ATGGTTTTAGGTAAACCTCAAACAGATCCAACGTTAGAATGGTTTTTGTCACACTGCCACATCCACAAATACCCTTCAAA
AAGCACACTGATCCACGCTGGTGAAAAAGCGGAAACTCTTTACTACATCGTTAAGGGTTCGGTAGCCGTACTGATCAAAG
ATGAAGAAGGGAAAGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATCGGTGAATTAGGTCTTTTTGAAGATGAT
CAAGAGCGTACCGCTTGGGTACGTGCAAAATCTCCTTGTGAGGTTGCTGAGATTTCATTTAAAAAATTCCGTCAGCTTAT
TCAGGTTAACCCAGACATCCTAATGCGTCTTTCTTCGCAAATGGCTAAGCGTCTGCAAGTAACTAGCCAAAAAGTAGGTG
ATCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAAACTCTACTTAACCTAGCGAAGCAACCTGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATCGGCCAGATTGTAGGTTGTTCTCGTGAGACTGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCACACGGTAAAACTATTGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y3IRJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

74.02

97.143

0.719
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment