Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   AABK03_RS05410 Genome accession   NZ_AP027676
Coordinates   1107887..1108402 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain PSS-08-1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102887..1113402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABK03_RS05365 (VEE18_10430) csrA 1103476..1103661 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  AABK03_RS05395 (VEE18_10440) yqaB 1105117..1105683 (+) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  AABK03_RS05400 (VEE18_10450) yqaA 1105680..1106108 (+) 429 WP_001287454.1 YqaA family protein -
  AABK03_RS05405 (VEE18_10460) gshA 1106181..1107737 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  AABK03_RS05410 (VEE18_10470) luxS 1107887..1108402 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  AABK03_RS05415 (VEE18_10480) emrB 1108466..1110004 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  AABK03_RS05420 (VEE18_10490) emrA 1110021..1111193 (-) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  AABK03_RS05425 (VEE18_10500) emrR 1111320..1111850 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  AABK03_RS05430 (VEE18_10510) ygaH 1111941..1112276 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  AABK03_RS05435 (VEE18_10520) ygaZ 1112266..1113003 (-) 738 WP_089582233.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=88935 AABK03_RS05410 WP_001130211.1 1107887..1108402(+) (luxS) [Escherichia coli strain PSS-08-1]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=88935 AABK03_RS05410 WP_001130211.1 1107887..1108402(+) (luxS) [Escherichia coli strain PSS-08-1]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment