Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   RWU60_RS15510 Genome accession   NZ_CP136172
Coordinates   3323342..3323752 (-) Length   136 a.a.
NCBI ID   WP_025464588.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ABO21-A051     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3318342..3328752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RWU60_RS15480 (RWU60_15480) - 3318428..3318697 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  RWU60_RS15485 (RWU60_15485) rapZ 3318694..3319545 (-) 852 WP_000821671.1 RNase adapter RapZ -
  RWU60_RS15490 (RWU60_15490) panC 3319568..3320416 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  RWU60_RS15495 (RWU60_15495) panB 3320420..3321229 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  RWU60_RS15500 (RWU60_15500) folK 3321275..3321757 (-) 483 WP_000219220.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  RWU60_RS15505 (RWU60_15505) pcnB 3321754..3323217 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  RWU60_RS15510 (RWU60_15510) comEA 3323342..3323752 (-) 411 WP_025464588.1 ComEA family DNA-binding protein Machinery gene
  RWU60_RS15515 (RWU60_15515) mazG 3323721..3324527 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  RWU60_RS15520 (RWU60_15520) - 3324640..3325413 (+) 774 WP_317856890.1 SDR family oxidoreductase -
  RWU60_RS15525 (RWU60_15525) - 3325458..3327764 (-) 2307 WP_000259109.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15672.93 Da        Isoelectric Point: 10.3828

>NTDB_id=889339 RWU60_RS15510 WP_025464588.1 3323342..3323752(-) (comEA) [Acinetobacter baumannii strain ABO21-A051]
MQYSMRFWKNKYFVLIMLCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGVGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=889339 RWU60_RS15510 WP_025464588.1 3323342..3323752(-) (comEA) [Acinetobacter baumannii strain ABO21-A051]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATGTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAATTAAAAGGTGTAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGGCAAAAGAA
CGGTAGTTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

98.529

100

0.985
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

42.748

96.324

0.412