Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   OCU35_RS12190 Genome accession   NZ_AP024864
Coordinates   2621028..2621660 (+) Length   210 a.a.
NCBI ID   WP_017029447.1    Uniprot ID   V5FDW9
Organism   Vibrio breoganii strain CAIM 1829     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2616028..2626660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCU35_RS12165 - 2616273..2618192 (+) 1920 WP_261825419.1 ABC transporter ATP-binding protein -
  OCU35_RS12170 - 2618189..2618653 (+) 465 WP_017029451.1 TIGR02444 family protein -
  OCU35_RS12175 - 2618653..2619633 (+) 981 WP_026026227.1 hydrolase -
  OCU35_RS12180 - 2619651..2619872 (+) 222 WP_017029449.1 YheU family protein -
  OCU35_RS12185 - 2619939..2620805 (+) 867 WP_102359913.1 phosphoribulokinase -
  OCU35_RS12190 crp 2621028..2621660 (+) 633 WP_017029447.1 cAMP-activated global transcriptional regulator CRP Regulator
  OCU35_RS12195 - 2621756..2622553 (-) 798 Protein_2312 DUF1338 domain-containing protein -
  OCU35_RS12200 astD 2622578..2624041 (-) 1464 WP_065599369.1 succinylglutamate-semialdehyde dehydrogenase -
  OCU35_RS12205 astA 2624065..2625084 (-) 1020 WP_261825420.1 arginine N-succinyltransferase -
  OCU35_RS12210 - 2625108..2626316 (-) 1209 WP_261825421.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23625.36 Da        Isoelectric Point: 7.4009

>NTDB_id=88904 OCU35_RS12190 WP_017029447.1 2621028..2621660(+) (crp) [Vibrio breoganii strain CAIM 1829]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEDD
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSSQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=88904 OCU35_RS12190 WP_017029447.1 2621028..2621660(+) (crp) [Vibrio breoganii strain CAIM 1829]
ATGGTTTTAGGTAAACCTCAAACAGATCCAACGTTAGAATGGTTTTTGTCACACTGCCACATCCACAAATACCCTTCAAA
AAGCACACTGATCCATGCTGGTGAAAAAGCAGAAACTCTTTACTACATCGTTAAGGGTTCGGTTGCCGTACTGATCAAAG
ATGAAGAAGGGAAAGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATCGGTGAACTAGGTCTTTTTGAAGATGAT
CAAGAGCGTACTGCTTGGGTACGAGCTAAATCACCATGTGAGGTTGCTGAAATCTCATTCAAAAAATTCCGTCAGCTAAT
TCAGGTTAACCCAGACATCCTAATGCGTCTTTCTTCGCAAATGGCTAACCGTCTGCAGGTAACTAGCCAGAAAGTCGGTG
ATCTTGCGTTCCTAGACGTTACTGGTCGTATCGCACAGACTCTACTGAACCTAGCGAAGCAACCTGATGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGTCAGATTGTAGGTTGTTCTCGTGAGACCGTTGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACCTGATCTCTGCACACGGTAAAACTATTGTGGTTTACGGCACTCGCTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V5FDW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.143

100

0.971
  crp Haemophilus influenzae Rd KW20

74.02

97.143

0.719
  crp Acinetobacter baumannii D1279779

46.86

98.571

0.462

Multiple sequence alignment