Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   F6I35_RS02320 Genome accession   NZ_CP136160
Coordinates   408878..410836 (+) Length   652 a.a.
NCBI ID   WP_024052151.1    Uniprot ID   -
Organism   Streptococcus anginosus strain UMB8616     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 403878..415836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F6I35_RS02305 (F6I35_0002305) ftsL 404790..405110 (+) 321 WP_024052154.1 cell division protein FtsL -
  F6I35_RS02310 (F6I35_0002310) pbp2X 405114..407369 (+) 2256 WP_024052153.1 penicillin-binding protein PBP2X -
  F6I35_RS02315 (F6I35_0002315) mraY 407371..408354 (+) 984 WP_024052152.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  F6I35_RS02320 (F6I35_0002320) amiA3 408878..410836 (+) 1959 WP_024052151.1 peptide ABC transporter substrate-binding protein Regulator
  F6I35_RS02330 (F6I35_0002330) - 411306..412187 (+) 882 WP_003025917.1 class II fructose-bisphosphate aldolase -
  F6I35_RS02340 (F6I35_0002340) - 412473..413729 (-) 1257 WP_070815197.1 ISL3 family transposase -
  F6I35_RS02345 (F6I35_0002345) - 414052..414498 (+) 447 Protein_421 LytTR family DNA-binding domain-containing protein -
  F6I35_RS02350 (F6I35_0002350) - 414504..415166 (+) 663 WP_024052148.1 LiaF transmembrane domain-containing protein -
  F6I35_RS02355 (F6I35_0002355) rpmB 415301..415489 (+) 189 WP_003025909.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72378.61 Da        Isoelectric Point: 7.4268

>NTDB_id=888944 F6I35_RS02320 WP_024052151.1 408878..410836(+) (amiA3) [Streptococcus anginosus strain UMB8616]
MKSSKWIIATGVVLSAGILLSGCGKSASSTSTYSYVYTQDPDTLNYLMANRATTSDVVTNLVDGLLENDQYGNLVPALAK
SWTVSKDGLTYTYKLHKDAKWYTSEGEEYASVKAQDFVTGLKYAADNKSEALYLVQDSVKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLSRAETYWNSKTTNNILFPVNADFLKSQGKKFGSVKPTSILYNGPYLLKSLTAKSSMEFAKNPHYYDKKNV
HLDNIKLTYYDGSDQEALIRNFTDGAYSAARLYPNSSSFASVKKQYANNIIYSLQDATSYYYNFNLNRQSYNHTSKKTDA
QKAATQEAVLNKAFRQAINFAYNRTSYGAQSNGKDGATKVLRNTLVPPTFVSIGDKTFGDVVSSKLVNYGSEWSNMNLAD
AQDAYYNPEKAKAKFAQAKAELQAKGVQFPIHLDVPADQTSKIGVQWESSMKQSVESVLGTENVVIDIQQMSSDELNNIS
YFANTAAQKDYDLYNGGWSGDYQDPSTYLDTLNIKNGGSLQNFGLEPGQENDKIKAVGLDTYTEMLAEANAETNEATRYE
KYAEAQAWLIDSGLTMPNLSLGGTPSVTKTVPFSRSYSLVGIKGASSSYFKYVKLQDKIVTTKEYESAKKKWLKEKETSN
KKAQDDYENHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=888944 F6I35_RS02320 WP_024052151.1 408878..410836(+) (amiA3) [Streptococcus anginosus strain UMB8616]
ATGAAATCATCAAAATGGATTATTGCAACAGGAGTTGTGCTAAGCGCTGGAATCCTATTATCAGGTTGTGGCAAGTCAGC
TTCTAGCACATCAACTTATTCATACGTGTATACACAAGATCCAGACACGCTAAATTATCTGATGGCGAATCGTGCGACAA
CTTCAGATGTTGTGACTAACTTAGTTGATGGATTATTGGAAAATGACCAGTACGGAAATTTAGTTCCGGCGCTTGCTAAG
TCATGGACAGTCTCCAAAGATGGCTTGACATATACGTATAAATTACATAAAGATGCTAAATGGTACACATCAGAAGGTGA
AGAGTACGCAAGTGTAAAAGCGCAAGACTTTGTAACTGGCTTGAAATACGCCGCAGATAATAAATCAGAAGCCCTTTACC
TCGTTCAAGATTCTGTCAAAGGTTTAGATGCTTACATCAAGGGTGAAACGAAAGATTTTTCAACGGTTGGAGTAAAAGCT
CTAGATGACTATACAGTACAGTATACACTCAGCCGTGCAGAGACTTATTGGAATTCAAAAACGACCAATAATATCCTCTT
CCCAGTTAATGCAGATTTCTTGAAATCACAAGGAAAAAAATTTGGTTCTGTAAAACCAACCAGCATTCTATACAATGGTC
CTTATCTATTGAAGTCTCTGACAGCCAAGTCTTCTATGGAATTTGCTAAAAATCCTCATTACTATGATAAAAAGAATGTT
CATTTGGATAACATTAAATTGACATATTATGACGGCTCTGACCAAGAAGCCCTTATCCGTAACTTCACAGATGGTGCCTA
TAGTGCAGCTCGTCTTTATCCAAATAGCTCTAGTTTTGCTTCTGTTAAGAAACAATATGCTAACAATATCATCTATAGTT
TGCAAGATGCGACCAGCTACTATTATAACTTTAATTTAAATCGTCAGTCCTATAACCATACATCGAAGAAAACAGATGCT
CAAAAGGCTGCGACCCAAGAAGCGGTGCTAAATAAAGCTTTCCGTCAAGCTATCAATTTTGCCTATAATCGTACTTCTTA
TGGTGCACAAAGTAATGGGAAAGACGGAGCGACAAAGGTATTGCGGAACACACTCGTGCCACCAACATTTGTTTCTATCG
GTGATAAAACGTTTGGTGATGTTGTGTCTTCTAAGCTGGTAAACTATGGCTCAGAATGGTCAAACATGAATTTGGCCGAT
GCACAAGATGCTTATTACAATCCAGAAAAAGCTAAAGCAAAGTTTGCTCAAGCTAAAGCAGAACTGCAAGCAAAGGGTGT
TCAGTTTCCTATCCACTTAGATGTACCAGCTGATCAGACAAGTAAAATTGGTGTTCAATGGGAAAGTTCCATGAAACAAT
CTGTTGAGTCTGTCTTAGGCACAGAAAATGTTGTCATTGATATTCAACAAATGAGTTCAGATGAATTAAATAATATCAGT
TATTTTGCTAATACAGCTGCTCAAAAGGACTATGATTTGTATAATGGTGGTTGGTCTGGTGACTATCAAGACCCATCTAC
TTATCTAGATACTTTGAATATAAAAAATGGTGGTAGTTTACAAAACTTTGGTCTGGAACCAGGTCAAGAAAATGATAAGA
TCAAGGCAGTTGGACTGGACACATATACAGAGATGCTAGCAGAAGCAAATGCTGAAACCAACGAAGCTACACGCTATGAA
AAATATGCCGAGGCGCAAGCATGGTTAATTGATAGTGGCTTGACAATGCCAAACCTCTCTCTTGGAGGAACACCATCTGT
GACGAAAACAGTTCCATTTAGCCGTTCTTATTCATTAGTTGGAATCAAAGGTGCTTCAAGCAGTTATTTCAAATATGTCA
AACTGCAAGACAAAATTGTAACAACAAAAGAATACGAAAGTGCTAAAAAGAAATGGCTAAAAGAAAAAGAAACCTCTAAT
AAAAAAGCGCAAGATGACTACGAAAATCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

57.23

100

0.577
  amiA3 Streptococcus thermophilus LMG 18311

57.078

100

0.575
  amiA Streptococcus salivarius strain HSISS4

57.078

100

0.575