Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | RWA21_RS05095 | Genome accession | NZ_CP136114 |
| Coordinates | 1058290..1058775 (+) | Length | 161 a.a. |
| NCBI ID | WP_005716158.1 | Uniprot ID | A0AB33XSR6 |
| Organism | Lacticaseibacillus rhamnosus strain LMG 23327 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1044941..1085869 | 1058290..1058775 | within | 0 |
Gene organization within MGE regions
Location: 1044941..1085869
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RWA21_RS04975 (RWA21_04975) | - | 1044941..1046125 (-) | 1185 | WP_005716131.1 | tyrosine-type recombinase/integrase | - |
| RWA21_RS04980 (RWA21_04980) | - | 1046470..1047471 (-) | 1002 | WP_049170629.1 | hypothetical protein | - |
| RWA21_RS04985 (RWA21_04985) | - | 1047582..1047785 (-) | 204 | WP_005716134.1 | hypothetical protein | - |
| RWA21_RS04990 (RWA21_04990) | - | 1047809..1048234 (-) | 426 | WP_015764910.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| RWA21_RS04995 (RWA21_04995) | - | 1048620..1048838 (+) | 219 | WP_016364974.1 | hypothetical protein | - |
| RWA21_RS05000 (RWA21_05000) | - | 1048839..1049594 (-) | 756 | WP_003606998.1 | hypothetical protein | - |
| RWA21_RS05005 (RWA21_05005) | - | 1049701..1050402 (-) | 702 | WP_005716136.1 | DUF3862 domain-containing protein | - |
| RWA21_RS05010 (RWA21_05010) | - | 1050462..1050884 (-) | 423 | WP_032961064.1 | ImmA/IrrE family metallo-endopeptidase | - |
| RWA21_RS05015 (RWA21_05015) | - | 1050874..1051209 (-) | 336 | WP_005714743.1 | helix-turn-helix domain-containing protein | - |
| RWA21_RS05020 (RWA21_05020) | - | 1051346..1051588 (+) | 243 | WP_005716140.1 | helix-turn-helix transcriptional regulator | - |
| RWA21_RS05025 (RWA21_05025) | - | 1051585..1051749 (+) | 165 | WP_005716141.1 | hypothetical protein | - |
| RWA21_RS05030 (RWA21_05030) | - | 1051925..1052632 (-) | 708 | WP_005716144.1 | hypothetical protein | - |
| RWA21_RS05035 (RWA21_05035) | - | 1052629..1052859 (-) | 231 | WP_100223706.1 | helix-turn-helix domain-containing protein | - |
| RWA21_RS05040 (RWA21_05040) | - | 1053000..1053206 (+) | 207 | WP_032954501.1 | helix-turn-helix domain-containing protein | - |
| RWA21_RS05045 (RWA21_05045) | - | 1053206..1053553 (+) | 348 | WP_005716147.1 | hypothetical protein | - |
| RWA21_RS05050 (RWA21_05050) | - | 1053546..1054277 (+) | 732 | WP_005716152.1 | antA/AntB antirepressor family protein | - |
| RWA21_RS05055 (RWA21_05055) | - | 1054343..1054891 (+) | 549 | WP_032954503.1 | hypothetical protein | - |
| RWA21_RS05060 (RWA21_05060) | - | 1054870..1055100 (+) | 231 | WP_005711341.1 | hypothetical protein | - |
| RWA21_RS05065 (RWA21_05065) | - | 1055104..1055232 (+) | 129 | WP_005711343.1 | hypothetical protein | - |
| RWA21_RS05070 (RWA21_05070) | - | 1055244..1055462 (+) | 219 | WP_015764324.1 | hypothetical protein | - |
| RWA21_RS05075 (RWA21_05075) | - | 1055464..1055634 (+) | 171 | WP_005716154.1 | hypothetical protein | - |
| RWA21_RS05080 (RWA21_05080) | - | 1055646..1056521 (+) | 876 | WP_005716155.1 | recombinase RecT | - |
| RWA21_RS05085 (RWA21_05085) | - | 1056403..1057305 (+) | 903 | WP_284143497.1 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| RWA21_RS05090 (RWA21_05090) | - | 1057321..1058277 (+) | 957 | WP_005716157.1 | DnaD domain-containing protein | - |
| RWA21_RS05095 (RWA21_05095) | ssb | 1058290..1058775 (+) | 486 | WP_005716158.1 | single-stranded DNA-binding protein | Machinery gene |
| RWA21_RS05100 (RWA21_05100) | - | 1059083..1059298 (+) | 216 | WP_005711356.1 | helix-turn-helix transcriptional regulator | - |
| RWA21_RS05105 (RWA21_05105) | - | 1059295..1059744 (+) | 450 | WP_005716160.1 | hypothetical protein | - |
| RWA21_RS05110 (RWA21_05110) | - | 1059791..1060045 (+) | 255 | WP_005716161.1 | hypothetical protein | - |
| RWA21_RS05115 (RWA21_05115) | - | 1060042..1060437 (+) | 396 | WP_032954505.1 | endodeoxyribonuclease | - |
| RWA21_RS05120 (RWA21_05120) | - | 1060421..1060546 (+) | 126 | WP_005716164.1 | hypothetical protein | - |
| RWA21_RS05125 (RWA21_05125) | - | 1060543..1060833 (+) | 291 | WP_005716165.1 | hypothetical protein | - |
| RWA21_RS05130 (RWA21_05130) | - | 1060826..1061062 (+) | 237 | WP_032954507.1 | hypothetical protein | - |
| RWA21_RS05135 (RWA21_05135) | - | 1061046..1061237 (+) | 192 | WP_032954508.1 | hypothetical protein | - |
| RWA21_RS05140 (RWA21_05140) | - | 1061306..1061527 (+) | 222 | WP_005711376.1 | helix-turn-helix domain-containing protein | - |
| RWA21_RS05145 (RWA21_05145) | - | 1061736..1062164 (+) | 429 | WP_005711378.1 | hypothetical protein | - |
| RWA21_RS05150 (RWA21_05150) | - | 1063191..1064339 (+) | 1149 | WP_005688554.1 | GcrA family cell cycle regulator | - |
| RWA21_RS05155 (RWA21_05155) | - | 1064332..1064718 (+) | 387 | WP_032954510.1 | hypothetical protein | - |
| RWA21_RS05160 (RWA21_05160) | - | 1064755..1065288 (+) | 534 | WP_005716172.1 | terminase small subunit | - |
| RWA21_RS05165 (RWA21_05165) | - | 1065266..1066621 (+) | 1356 | WP_005716173.1 | PBSX family phage terminase large subunit | - |
| RWA21_RS05170 (RWA21_05170) | - | 1066626..1068053 (+) | 1428 | WP_005716174.1 | phage portal protein | - |
| RWA21_RS05175 (RWA21_05175) | - | 1068019..1069005 (+) | 987 | WP_005716175.1 | minor capsid protein | - |
| RWA21_RS05180 (RWA21_05180) | - | 1069015..1069242 (+) | 228 | WP_005716176.1 | hypothetical protein | - |
| RWA21_RS05185 (RWA21_05185) | - | 1069253..1069576 (+) | 324 | WP_005716178.1 | hypothetical protein | - |
| RWA21_RS05190 (RWA21_05190) | - | 1069573..1069854 (+) | 282 | WP_005716179.1 | hypothetical protein | - |
| RWA21_RS05195 (RWA21_05195) | - | 1069972..1070613 (+) | 642 | WP_005716180.1 | DUF4355 domain-containing protein | - |
| RWA21_RS05200 (RWA21_05200) | - | 1070626..1070940 (+) | 315 | WP_005716181.1 | hypothetical protein | - |
| RWA21_RS05205 (RWA21_05205) | - | 1070954..1071973 (+) | 1020 | WP_005716182.1 | major capsid protein | - |
| RWA21_RS05210 (RWA21_05210) | - | 1071988..1072239 (+) | 252 | WP_080600005.1 | Ig-like domain-containing protein | - |
| RWA21_RS05215 (RWA21_05215) | - | 1072309..1072683 (+) | 375 | WP_003575585.1 | phage head-tail connector protein | - |
| RWA21_RS05220 (RWA21_05220) | - | 1072688..1072990 (+) | 303 | WP_005716184.1 | hypothetical protein | - |
| RWA21_RS05225 (RWA21_05225) | - | 1072987..1073352 (+) | 366 | WP_005716186.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| RWA21_RS05230 (RWA21_05230) | - | 1073353..1073757 (+) | 405 | WP_005716187.1 | DUF3168 domain-containing protein | - |
| RWA21_RS05235 (RWA21_05235) | - | 1073769..1074371 (+) | 603 | WP_005716188.1 | phage tail tube protein | - |
| RWA21_RS05240 (RWA21_05240) | - | 1074458..1074790 (+) | 333 | WP_005716189.1 | tail assembly chaperone | - |
| RWA21_RS05245 (RWA21_05245) | - | 1074895..1075248 (+) | 354 | WP_005711407.1 | hypothetical protein | - |
| RWA21_RS05250 (RWA21_05250) | - | 1075241..1078330 (+) | 3090 | WP_316058831.1 | tape measure protein | - |
| RWA21_RS05255 (RWA21_05255) | - | 1078331..1080319 (+) | 1989 | Protein_1007 | distal tail protein Dit | - |
| RWA21_RS05260 (RWA21_05260) | - | 1080320..1082755 (+) | 2436 | WP_005716193.1 | phage tail protein | - |
| RWA21_RS05265 (RWA21_05265) | - | 1082757..1083047 (+) | 291 | WP_005713395.1 | hypothetical protein | - |
| RWA21_RS05270 (RWA21_05270) | - | 1083040..1083171 (+) | 132 | WP_005714777.1 | XkdX family protein | - |
| RWA21_RS05275 (RWA21_05275) | - | 1083152..1083502 (+) | 351 | WP_225350104.1 | hypothetical protein | - |
| RWA21_RS05280 (RWA21_05280) | - | 1083517..1083951 (+) | 435 | WP_005716196.1 | phage holin | - |
| RWA21_RS05285 (RWA21_05285) | - | 1083951..1085072 (+) | 1122 | WP_005716197.1 | GH25 family lysozyme | - |
| RWA21_RS05290 (RWA21_05290) | - | 1085213..1085869 (+) | 657 | WP_005716198.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17644.37 Da Isoelectric Point: 7.9701
>NTDB_id=888493 RWA21_RS05095 WP_005716158.1 1058290..1058775(+) (ssb) [Lacticaseibacillus rhamnosus strain LMG 23327]
MLNSVSLTGRLTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTKKGSLVGVEGRIQTR
TYDNAQGQKIFVTEVIVDNFALLESRQASQNNPKSQQTANASATATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
MLNSVSLTGRLTRDVDLRYTQSGTAAGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAENFANFTKKGSLVGVEGRIQTR
TYDNAQGQKIFVTEVIVDNFALLESRQASQNNPKSQQTANASATATTNASQTTPNASRANTTDPFANNGQPIDIQDDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=888493 RWA21_RS05095 WP_005716158.1 1058290..1058775(+) (ssb) [Lacticaseibacillus rhamnosus strain LMG 23327]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATTT
GGCGCAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGGCAGAAAATATTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAACCCTAAATCACAGCAAACAGCCAATGCATCAGCAACAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTGACAAGAGATGTTGACTTGCGTTACACGCAAAGTGGCACGGCGGCAGG
ATCATTCACGCTGGCCGTTGACCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATTT
GGCGCAAGTCGGCTGAGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTACGATAACGCGCAAGGGCAGAAAATATTCGTGACCGAGGTAATCGTTGATAATTTTGCTTTGCTTGAGTCACGACA
GGCGTCTCAGAACAACCCTAAATCACAGCAAACAGCCAATGCATCAGCAACAGCGACCACAAACGCGAGTCAAACGACTC
CAAATGCTTCACGAGCGAATACCACGGATCCGTTTGCTAATAATGGCCAGCCGATAGACATCCAAGATGATGATTTGCCA
TTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
62.791 |
100 |
0.671 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.419 |
100 |
0.528 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
54.717 |
65.839 |
0.36 |