Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   RUI02_RS20975 Genome accession   NZ_CP136099
Coordinates   4051855..4052373 (-) Length   172 a.a.
NCBI ID   WP_003219228.1    Uniprot ID   A0A063XE16
Organism   Bacillus sp. TSA-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4046855..4057373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUI02_RS20945 (RUI02_20945) - 4047358..4048713 (+) 1356 WP_029318525.1 MFS transporter -
  RUI02_RS20950 (RUI02_20950) - 4048747..4049301 (-) 555 WP_033884396.1 sugar O-acetyltransferase -
  RUI02_RS20955 (RUI02_20955) - 4049319..4049699 (-) 381 WP_003244460.1 VOC family protein -
  RUI02_RS20960 (RUI02_20960) ccpB 4049755..4050690 (-) 936 WP_038429968.1 transcriptional regulator CcpB -
  RUI02_RS20965 (RUI02_20965) xth 4050749..4051507 (-) 759 WP_038429969.1 exodeoxyribonuclease III -
  RUI02_RS20970 (RUI02_20970) rpsR 4051572..4051811 (-) 240 WP_003219224.1 30S ribosomal protein S18 -
  RUI02_RS20975 (RUI02_20975) ssbA 4051855..4052373 (-) 519 WP_003219228.1 single-stranded DNA-binding protein SsbA Machinery gene
  RUI02_RS20980 (RUI02_20980) rpsF 4052414..4052701 (-) 288 WP_003244064.1 30S ribosomal protein S6 -
  RUI02_RS20985 (RUI02_20985) ychF 4052812..4053912 (-) 1101 WP_003242727.1 redox-regulated ATPase YchF -
  RUI02_RS20990 (RUI02_20990) - 4054039..4056042 (-) 2004 WP_046381481.1 molybdopterin-dependent oxidoreductase -
  RUI02_RS20995 (RUI02_20995) - 4056093..4056299 (-) 207 WP_003226838.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18742.31 Da        Isoelectric Point: 4.7621

>NTDB_id=888450 RUI02_RS20975 WP_003219228.1 4051855..4052373(-) (ssbA) [Bacillus sp. TSA-4]
MLNRVVLVGRLTKDPELRYTPNGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNGGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNNQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=888450 RUI02_RS20975 WP_003219228.1 4051855..4052373(-) (ssbA) [Bacillus sp. TSA-4]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAACGGTGCGGCTGTTGC
TACGTTTACTCTTGCTGTGAATCGTACATTTACGAACCAGTCCGGAGAACGTGAGGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTCTTGAAAAAAGGAAGCCTTGCAGGCGTAGATGGCCGTTTACAAACAAGA
AACTATGAAAACCAGCAAGGACAGCGTGTCTTCGTGACAGAGGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCGAAAAA
CGGCGGCGGTTCTGGTTCAGGTGGATACAACGAAGGAAACAGCGGCGGAGGCCAGTACTTTGGCGGAGGCCAAAATGATA
ATCCATTTGGGGGAAATCAAAACAACCAGAGACGCAATCAGGGGAACAGCTTTAATGATGACCCATTTGCCAACGACGGC
AAACCGATTGACATCTCGGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A063XE16

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssb Latilactobacillus sakei subsp. sakei 23K

58.192

100

0.599
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378