Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RS399_RS14115 Genome accession   NZ_CP135973
Coordinates   2834287..2835009 (+) Length   240 a.a.
NCBI ID   WP_142271070.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2829287..2840009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS14090 (RS399_14090) degS 2829595..2830752 (+) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  RS399_RS14095 (RS399_14095) degU 2830835..2831524 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RS399_RS14100 (RS399_14100) - 2831622..2832467 (+) 846 WP_084990969.1 DegV family protein -
  RS399_RS14105 (RS399_14105) comFA 2832575..2833954 (+) 1380 WP_084991031.1 ATP-dependent helicase ComFA Machinery gene
  RS399_RS14110 (RS399_14110) comFB 2834027..2834323 (+) 297 WP_084990967.1 late competence protein ComFB -
  RS399_RS14115 (RS399_14115) comFC 2834287..2835009 (+) 723 WP_142271070.1 ComF family protein Machinery gene
  RS399_RS14120 (RS399_14120) - 2835082..2835501 (+) 420 WP_084990965.1 TIGR03826 family flagellar region protein -
  RS399_RS14125 (RS399_14125) flgM 2835581..2835847 (+) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  RS399_RS14130 (RS399_14130) flgN 2835863..2836345 (+) 483 WP_003235451.1 flagellar protein FlgN -
  RS399_RS14135 (RS399_14135) flgK 2836364..2837881 (+) 1518 WP_084990963.1 flagellar hook-associated protein FlgK -
  RS399_RS14140 (RS399_14140) flgL 2837891..2838787 (+) 897 WP_019259606.1 flagellar hook-associated protein FlgL -
  RS399_RS14145 (RS399_14145) - 2838834..2839397 (+) 564 WP_003235445.1 DUF6470 family protein -
  RS399_RS14150 (RS399_14150) fliW 2839431..2839862 (+) 432 WP_014115344.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27386.70 Da        Isoelectric Point: 9.1310

>NTDB_id=888030 RS399_RS14115 WP_142271070.1 2834287..2835009(+) (comFC) [Bacillus inaquosorum strain SI3]
MPNEAGGGIHKLICLLCDSQFSQAVTWSALFLLKPDEKVCHTCRSKFKKITGKICALCGRPQSVHAVCRDCEVWKSRVSD
SLLLRQNRSVYTYNEMMKETLSRFKFRGDAEIINAFKSDFSSAFSEVYPDKYFVLVPIPLSKEREEERGFNQAQLLAECL
DRPIHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKARSVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=888030 RS399_RS14115 WP_142271070.1 2834287..2835009(+) (comFC) [Bacillus inaquosorum strain SI3]
ATGCCAAATGAAGCAGGAGGAGGCATTCATAAACTGATCTGCCTATTGTGCGATTCACAATTTTCTCAAGCTGTTACATG
GAGCGCCCTTTTTTTATTAAAGCCGGACGAAAAGGTCTGTCATACCTGCAGAAGCAAATTTAAAAAAATCACAGGAAAAA
TCTGCGCCTTGTGCGGCAGACCTCAATCCGTTCATGCGGTATGCAGAGATTGCGAGGTGTGGAAATCAAGGGTCAGTGAC
AGTTTGCTGCTCCGCCAAAACCGTTCAGTTTACACATATAATGAAATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGCGATTTTTCTTCAGCCTTCTCAGAGGTTTACCCCGATAAGTATTTTG
TTCTCGTTCCTATTCCGCTGAGTAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCGCAGCTCCTGGCAGAATGCTTA
GACCGGCCTATCCACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
GGAGCGTATTTTTGATACAAAAAACAACTCAGCCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCCGTTCAGTGGCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

91.25

100

0.913