Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RS399_RS14095 Genome accession   NZ_CP135973
Coordinates   2830835..2831524 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus inaquosorum strain SI3     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2825835..2836524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS14075 (RS399_14075) - 2826428..2827504 (+) 1077 WP_060399602.1 MraY family glycosyltransferase -
  RS399_RS14080 (RS399_14080) tagV 2827576..2828724 (-) 1149 WP_084990973.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RS399_RS14085 (RS399_14085) - 2828724..2829377 (-) 654 WP_084990971.1 YigZ family protein -
  RS399_RS14090 (RS399_14090) degS 2829595..2830752 (+) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  RS399_RS14095 (RS399_14095) degU 2830835..2831524 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RS399_RS14100 (RS399_14100) - 2831622..2832467 (+) 846 WP_084990969.1 DegV family protein -
  RS399_RS14105 (RS399_14105) comFA 2832575..2833954 (+) 1380 WP_084991031.1 ATP-dependent helicase ComFA Machinery gene
  RS399_RS14110 (RS399_14110) comFB 2834027..2834323 (+) 297 WP_084990967.1 late competence protein ComFB -
  RS399_RS14115 (RS399_14115) comFC 2834287..2835009 (+) 723 WP_142271070.1 ComF family protein Machinery gene
  RS399_RS14120 (RS399_14120) - 2835082..2835501 (+) 420 WP_084990965.1 TIGR03826 family flagellar region protein -
  RS399_RS14125 (RS399_14125) flgM 2835581..2835847 (+) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  RS399_RS14130 (RS399_14130) flgN 2835863..2836345 (+) 483 WP_003235451.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=888028 RS399_RS14095 WP_003219701.1 2830835..2831524(+) (degU) [Bacillus inaquosorum strain SI3]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=888028 RS399_RS14095 WP_003219701.1 2830835..2831524(+) (degU) [Bacillus inaquosorum strain SI3]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTAAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTAGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTTCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTTGCCGAGGGTGGCTCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACATCCTCAGCATGAGGTTTACCCTGAGATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTGAAAAACCATGTAAGTAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1