Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   RS399_RS14105 Genome accession   NZ_CP135973
Coordinates   2832575..2833954 (+) Length   459 a.a.
NCBI ID   WP_084991031.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2827575..2838954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS14080 (RS399_14080) tagV 2827576..2828724 (-) 1149 WP_084990973.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  RS399_RS14085 (RS399_14085) - 2828724..2829377 (-) 654 WP_084990971.1 YigZ family protein -
  RS399_RS14090 (RS399_14090) degS 2829595..2830752 (+) 1158 WP_003235467.1 two-component sensor histidine kinase DegS Regulator
  RS399_RS14095 (RS399_14095) degU 2830835..2831524 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RS399_RS14100 (RS399_14100) - 2831622..2832467 (+) 846 WP_084990969.1 DegV family protein -
  RS399_RS14105 (RS399_14105) comFA 2832575..2833954 (+) 1380 WP_084991031.1 ATP-dependent helicase ComFA Machinery gene
  RS399_RS14110 (RS399_14110) comFB 2834027..2834323 (+) 297 WP_084990967.1 late competence protein ComFB -
  RS399_RS14115 (RS399_14115) comFC 2834287..2835009 (+) 723 WP_142271070.1 ComF family protein Machinery gene
  RS399_RS14120 (RS399_14120) - 2835082..2835501 (+) 420 WP_084990965.1 TIGR03826 family flagellar region protein -
  RS399_RS14125 (RS399_14125) flgM 2835581..2835847 (+) 267 WP_003235453.1 flagellar biosynthesis anti-sigma factor FlgM -
  RS399_RS14130 (RS399_14130) flgN 2835863..2836345 (+) 483 WP_003235451.1 flagellar protein FlgN -
  RS399_RS14135 (RS399_14135) flgK 2836364..2837881 (+) 1518 WP_084990963.1 flagellar hook-associated protein FlgK -
  RS399_RS14140 (RS399_14140) flgL 2837891..2838787 (+) 897 WP_019259606.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 52187.31 Da        Isoelectric Point: 10.0978

>NTDB_id=888029 RS399_RS14105 WP_084991031.1 2832575..2833954(+) (comFA) [Bacillus inaquosorum strain SI3]
MIVQAEKNISFSKELQQTLQSRQLLRTELPFSDEMIEWHIKNDYIAAQNSISINKRGYRCNRCGQNDQRYFSFYYSFGKN
QLYCRSCVMMGRVSEDVPLYSWIEEDESNWQPIKLTWNGQLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFLGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSEDKGRLSPLMISTTHQLLRYKDAFDVMIVDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKTLNGQLHSVRIPARHHKKPLPEPRFVWCGNWKKKLNRNKIPTAVKR
WIAFHVKEGRPVFLFVPSVSVLKKAAACFKDVNCRIASVHAEDKQRKEKVQQFRNGQLDLLLTTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEHADGDVIFFHFGKTKSMLDARRHIKEMNDLATKK

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=888029 RS399_RS14105 WP_084991031.1 2832575..2833954(+) (comFA) [Bacillus inaquosorum strain SI3]
CTGATTGTGCAAGCTGAAAAGAACATTTCCTTCTCAAAAGAATTGCAGCAGACGCTTCAAAGCCGTCAGTTGCTCAGAAC
TGAACTCCCATTTTCCGATGAGATGATTGAATGGCATATCAAAAATGACTATATCGCCGCTCAAAACTCTATATCCATAA
ATAAACGGGGGTATAGATGTAATAGGTGCGGCCAAAATGATCAGCGGTACTTTTCTTTTTATTATTCATTTGGAAAGAAT
CAGCTGTATTGCCGTTCTTGTGTCATGATGGGCAGAGTGAGTGAAGATGTTCCTTTATATTCATGGATAGAGGAGGATGA
ATCCAATTGGCAGCCTATCAAGCTTACGTGGAATGGCCAGCTCTCAAGCGGACAGCAAAAAGCTGCCAATGTCTTAATTG
AGGCCATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAGATGCTATTCCTCGGTATA
GAATCCGCGTTAAATCAAGGACTGCGTGTTTGTATTGCGACACCCCGCACCGATGTTGTATTAGAGCTAGCTCCGAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTATGGAGGAAGTGAGGACAAAGGGCGCTTATCTCCGCTTATGA
TTTCCACTACACATCAACTCTTGCGATATAAAGACGCATTCGACGTCATGATCGTTGATGAAGTTGATGCTTTTCCGTAT
TCTGCTGATCAAACTCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACTCTTGTTTACCTAAGTGCAACACC
CCCTAAAGAATTAAAAAGAAAAACACTGAACGGACAGTTACACTCAGTTCGGATTCCAGCAAGACACCACAAAAAACCTT
TGCCAGAACCGCGCTTTGTATGGTGCGGAAACTGGAAAAAGAAATTAAACCGAAACAAAATTCCGACAGCAGTAAAGAGA
TGGATAGCGTTTCATGTAAAAGAGGGGAGGCCTGTTTTTTTATTTGTTCCCTCCGTTTCTGTTCTGAAAAAGGCAGCTGC
ATGCTTTAAAGATGTTAATTGCAGAATTGCGTCTGTACATGCGGAAGATAAGCAAAGAAAAGAGAAAGTACAGCAATTCA
GAAACGGCCAGCTTGATCTCTTACTCACAACAACAATACTAGAAAGAGGCGTCACGGTCCCAAAGGTGCAGACAGGTGTA
TTAGGGGCAGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGGCGGCATAAAGAGCATGC
GGATGGTGATGTCATTTTCTTTCACTTCGGAAAAACAAAGAGTATGCTGGATGCAAGAAGGCATATAAAAGAAATGAATG
ACTTAGCAACAAAAAAATGA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

90.393

99.782

0.902