Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   RS399_RS08835 Genome accession   NZ_CP135973
Coordinates   1785268..1786416 (-) Length   382 a.a.
NCBI ID   WP_019257465.1    Uniprot ID   A0A9Q4EQT8
Organism   Bacillus inaquosorum strain SI3     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1780268..1791416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS08805 (RS399_08805) yclP 1780418..1781176 (-) 759 WP_003240196.1 petrobactin ABC transporter ATP-binding protein YclP -
  RS399_RS08810 (RS399_08810) yclO 1781170..1782117 (-) 948 WP_003240194.1 petrobactin ABC transporter permease YclO -
  RS399_RS08815 (RS399_08815) ceuB 1782110..1783060 (-) 951 WP_084994566.1 petrobactin ABC transporter permease YclN Machinery gene
  RS399_RS08820 (RS399_08820) - 1783444..1784817 (+) 1374 WP_084994563.1 aspartate kinase -
  RS399_RS08825 (RS399_08825) - 1784960..1785067 (+) 108 WP_019257466.1 YjcZ family sporulation protein -
  RS399_RS08830 (RS399_08830) phrC 1785162..1785284 (-) 123 WP_003240188.1 phosphatase RapC inhibitor PhrC Regulator
  RS399_RS08835 (RS399_08835) rapC 1785268..1786416 (-) 1149 WP_019257465.1 response regulator aspartate phosphatase RapC Regulator
  RS399_RS08840 (RS399_08840) yclK 1786579..1787994 (-) 1416 WP_084994560.1 two-component system sensor histidine kinase YclK -
  RS399_RS08845 (RS399_08845) yclJ 1787981..1788664 (-) 684 WP_084994557.1 two-component system response regulator YclJ -
  RS399_RS08850 (RS399_08850) - 1788877..1790337 (+) 1461 WP_084994555.1 ABC transporter permease -
  RS399_RS08855 (RS399_08855) - 1790353..1791033 (+) 681 WP_084994552.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45718.80 Da        Isoelectric Point: 5.0594

>NTDB_id=888009 RS399_RS08835 WP_019257465.1 1785268..1786416(-) (rapC) [Bacillus inaquosorum strain SI3]
MKSGVIPSSAVGQKINEWYKYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALEMAEAEQKAQLVGRAYYNLGLCYYNQELLD
PAIDYFEKSVSTFESSRIINSLPQAYFLITLIYYKRGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFHYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=888009 RS399_RS08835 WP_019257465.1 1785268..1786416(-) (rapC) [Bacillus inaquosorum strain SI3]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAATGGTACAAATATATCCGGACATTCAGCGT
ACCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCACGATTCCAACTTGCTGCTCTATT
ATTCACTAATGGAATTCCGCCACCAGCTTATGCTTGATTATCTAGAGCCCTTAGAGAAATTAAATATCGAAGACCAGCCA
AGTCTGTCTGAATTATCAAGAAACATCGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTATGTGAATTTTTT
CCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATATTATAAACAGGCGGAGAAAAAGCTTTCCT
TTGTTGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACATACTTT
TCACTGATCAATATAAAAAACGCCTATGAAATTTATGTGGAGCAGGAAACTTATAATGTGAGAATTATTCAATGCCATTT
CGTATTCGGGGTCAACCTGATGGATGAAAGGAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCGAAATGGCCG
AAGCAGAACAAAAAGCCCAGCTGGTTGGAAGAGCGTACTACAATCTTGGGTTATGCTATTACAACCAAGAGCTTCTTGAC
CCTGCCATTGACTACTTTGAAAAATCGGTTTCCACGTTTGAAAGCAGCAGAATCATCAATTCACTGCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACGGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTACGCGGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCATTACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
CTACTATGAACAAAAATGGTTCAAACTGTCTGCTTCCTACTTTCTAAAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

97.382

100

0.974
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571