Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   RS399_RS08815 Genome accession   NZ_CP135973
Coordinates   1782110..1783060 (-) Length   316 a.a.
NCBI ID   WP_084994566.1    Uniprot ID   -
Organism   Bacillus inaquosorum strain SI3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1777110..1788060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS399_RS08795 (RS399_08795) - 1777976..1779394 (+) 1419 WP_003240201.1 MDR family MFS transporter -
  RS399_RS08800 (RS399_08800) - 1779440..1780396 (-) 957 WP_003240199.1 siderophore ABC transporter substrate-binding protein -
  RS399_RS08805 (RS399_08805) yclP 1780418..1781176 (-) 759 WP_003240196.1 petrobactin ABC transporter ATP-binding protein YclP -
  RS399_RS08810 (RS399_08810) yclO 1781170..1782117 (-) 948 WP_003240194.1 petrobactin ABC transporter permease YclO -
  RS399_RS08815 (RS399_08815) ceuB 1782110..1783060 (-) 951 WP_084994566.1 petrobactin ABC transporter permease YclN Machinery gene
  RS399_RS08820 (RS399_08820) - 1783444..1784817 (+) 1374 WP_084994563.1 aspartate kinase -
  RS399_RS08825 (RS399_08825) - 1784960..1785067 (+) 108 WP_019257466.1 YjcZ family sporulation protein -
  RS399_RS08830 (RS399_08830) phrC 1785162..1785284 (-) 123 WP_003240188.1 phosphatase RapC inhibitor PhrC Regulator
  RS399_RS08835 (RS399_08835) rapC 1785268..1786416 (-) 1149 WP_019257465.1 response regulator aspartate phosphatase RapC Regulator
  RS399_RS08840 (RS399_08840) yclK 1786579..1787994 (-) 1416 WP_084994560.1 two-component system sensor histidine kinase YclK -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34832.21 Da        Isoelectric Point: 9.8810

>NTDB_id=888007 RS399_RS08815 WP_084994566.1 1782110..1783060(-) (ceuB) [Bacillus inaquosorum strain SI3]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSNQEASTLFASRLPRLISIIIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGSIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYIFADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLVTSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=888007 RS399_RS08815 WP_084994566.1 1782110..1783060(-) (ceuB) [Bacillus inaquosorum strain SI3]
ATGAAGCTACGTTACTTATTCATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGCGTGGAAGACCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAACCAAGAGGCGTCAACGCTGTTTGCTAGCCGTTTGCCGCGATTGATCAGCATTATCA
TCGCTGGCTTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAACAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCCTGCTGCTGTTTACATCTGCCAGTCCTTTGATGAAAATGCT
GGTTGCGTTTGTCTTTGCCCTTGCAGGAAATTTCTTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACGATCT
TTATTCCGCTTGTCGGGTTAATGCTCGGGAGTATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTTCAAGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATATTTTTGCGGATAAATTCACAGTGGCCGGTATGGGAGAAAGCTTTTCTGTCAACCTTGGCC
TGAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGGTCACGTCTCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTCAAGAGCAGCCTGCCGCATAC
TGCGCTGTTGGGGGCGGTTTTTGTGCTGTTTTGCGATATCTTGGGCAGAATTATTATCTTCCCTTACGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.215

100

0.522