Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   RRX38_RS24015 Genome accession   NZ_CP135971
Coordinates   5448228..5450435 (+) Length   735 a.a.
NCBI ID   WP_315960947.1    Uniprot ID   A0AA96U8N7
Organism   Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5443228..5455435
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRX38_RS24000 (RRX38_24000) - 5445583..5446206 (+) 624 WP_315960946.1 glutathione S-transferase -
  RRX38_RS24005 (RRX38_24005) - 5446370..5447302 (+) 933 WP_295474474.1 ABC transporter ATP-binding protein -
  RRX38_RS24010 (RRX38_24010) - 5447299..5448087 (+) 789 WP_295474472.1 ABC transporter permease -
  RRX38_RS24015 (RRX38_24015) comA 5448228..5450435 (+) 2208 WP_315960947.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RRX38_RS24020 (RRX38_24020) exbB 5450507..5451181 (+) 675 WP_295474466.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RRX38_RS24025 (RRX38_24025) - 5451178..5451609 (+) 432 WP_295474463.1 ExbD/TolR family protein -
  RRX38_RS24030 (RRX38_24030) lpxK 5451609..5452604 (+) 996 WP_315960948.1 tetraacyldisaccharide 4'-kinase -
  RRX38_RS24035 (RRX38_24035) - 5452616..5452801 (+) 186 WP_295474456.1 Trm112 family protein -
  RRX38_RS24040 (RRX38_24040) kdsB 5452798..5453562 (+) 765 WP_315960949.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RRX38_RS24045 (RRX38_24045) murB 5453562..5454581 (+) 1020 WP_315960950.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 79973.67 Da        Isoelectric Point: 10.1250

>NTDB_id=887980 RRX38_RS24015 WP_315960947.1 5448228..5450435(+) (comA) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
MRTGMVALALGLLSLRFLPALPPGWLLLLMPLLALMLLPYRTYPLALWLLGFTWACVSAQAALDDRLAPSLDGRTLWLQG
RVSGLPDSRGEVVRFELEDVQSRRVGLPQRIRVSWRGGPQVRSGERWRLAVKLRRPDGLLNPGTFDYPAWLLAQRIGATG
TVVDGQRLSPAAGAWREALRQRLLAVDGQGREGALAALVLGDGSGLSRDDWQVLQDTGTVHLLVISGQHVGLLAGALYLL
IAALARWGLWPSGWPWLPWACALAFTAALGYGWLAGFDVPVRRACIMVGLLLWWRLRFRHLGPTWPWLVALNGVLLLEPL
ASLQPGFWLSFGAVGVLLMAFGGRVGGWSWWRAWTRAQWLIAIGLLPALLALGLPVSLSGPAANLLAVPWVSLVVLPLAL
LGTLMLPVPLLGEALLWLAGGALQLLFWVLAEFAAQWPAWVPPGLPMWAWWLCLAGVLCLLLPAGVPCRPLGWPLVLMCA
FVPQQRLPAGQAEVQMLDVGQGQAVLIRTRHHSLLYDAGPAAGDFDIGERVVVPVLRKAGVTRLDLLLVSHAHADHAGGA
PAVQRALPVDRMLAGEPGELPGAEACVVGQRWEWDGVRFATWRWDAARHSNDASCVLSVEANGERLLLTGDIEGAAGRAL
LDSGFELRARWFQAPHHGSRTSSSAALLRRVMPEATLVSRGRHNSFGHPHPLVLARYRSLGITVHDTGEQGAVSLRLGTF
GEALGARAERRFWRD

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=887980 RRX38_RS24015 WP_315960947.1 5448228..5450435(+) (comA) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
ATGCGCACGGGGATGGTCGCGCTGGCGCTGGGGCTGCTGAGCCTGCGTTTTCTGCCGGCACTGCCGCCGGGCTGGCTGTT
GCTGTTGATGCCACTGCTGGCGCTGATGCTGCTGCCGTATCGCACTTACCCGCTGGCGCTCTGGTTGCTGGGTTTCACCT
GGGCCTGTGTTTCGGCACAGGCAGCCCTGGATGATCGCCTGGCACCGAGCCTGGATGGCCGGACACTGTGGCTGCAGGGC
CGGGTGAGCGGGCTGCCGGACAGCCGTGGTGAAGTGGTGCGCTTCGAACTTGAGGATGTGCAGTCGCGCCGTGTCGGCTT
GCCGCAGCGCATCCGGGTGAGCTGGCGCGGCGGGCCACAGGTACGCAGTGGCGAGCGCTGGCGCCTGGCAGTCAAGCTAC
GGCGCCCGGACGGGCTGCTCAACCCCGGCACCTTCGATTACCCTGCCTGGCTGTTGGCGCAGCGCATCGGTGCCACCGGC
ACGGTGGTCGATGGGCAGCGTCTTTCTCCGGCAGCAGGCGCCTGGCGCGAGGCATTGCGGCAACGCCTGCTGGCTGTGGA
CGGCCAGGGCCGGGAGGGCGCCCTGGCGGCGCTGGTGCTGGGCGACGGCTCGGGCTTGTCGCGGGACGACTGGCAGGTGT
TGCAGGATACCGGCACGGTGCACCTGCTGGTGATTTCCGGGCAGCATGTCGGGCTGCTGGCCGGGGCGCTCTATCTGCTG
ATTGCGGCGCTGGCCCGCTGGGGCCTGTGGCCGTCGGGCTGGCCCTGGCTGCCCTGGGCGTGCGCGCTGGCCTTTACGGC
GGCGCTGGGTTACGGCTGGCTGGCCGGCTTCGACGTGCCGGTGCGGCGCGCTTGCATCATGGTTGGCCTGCTGCTGTGGT
GGCGCCTGCGCTTTCGTCACCTGGGGCCGACCTGGCCCTGGCTGGTGGCGCTCAACGGCGTGTTGCTGCTGGAGCCGCTG
GCCAGCCTGCAACCTGGGTTCTGGTTGTCGTTCGGCGCCGTCGGCGTACTGCTCATGGCGTTTGGCGGACGAGTCGGCGG
CTGGTCCTGGTGGCGCGCCTGGACCCGTGCGCAATGGCTGATTGCAATCGGCTTGCTTCCGGCGCTGCTGGCGCTGGGGC
TGCCGGTCAGTCTCAGTGGTCCGGCGGCCAACCTGCTGGCAGTGCCTTGGGTGAGTCTGGTGGTATTGCCCCTGGCGTTG
CTCGGCACCCTGATGCTGCCGGTGCCCTTGCTCGGGGAGGCGTTGCTGTGGCTGGCGGGTGGCGCCTTGCAGCTGCTGTT
CTGGGTCTTGGCCGAGTTCGCTGCGCAGTGGCCGGCCTGGGTGCCGCCGGGCCTGCCGATGTGGGCCTGGTGGCTGTGCC
TGGCCGGTGTGCTGTGCCTGCTGCTACCGGCCGGAGTGCCGTGCCGACCCTTGGGTTGGCCGCTGGTGCTGATGTGTGCG
TTCGTGCCGCAACAGCGGCTGCCCGCCGGACAGGCCGAGGTGCAGATGCTCGACGTGGGGCAGGGGCAAGCCGTGCTGAT
CCGTACCCGGCATCACAGCCTGCTGTATGACGCCGGCCCGGCCGCCGGGGATTTCGATATTGGCGAGCGCGTGGTGGTGC
CCGTGTTGCGCAAGGCCGGTGTCACGCGCCTGGATCTGCTGTTGGTCAGCCATGCGCATGCCGACCATGCCGGTGGCGCG
CCGGCCGTGCAGCGCGCCTTGCCGGTGGATCGGATGCTGGCGGGCGAGCCCGGTGAGCTGCCAGGCGCCGAGGCCTGCGT
TGTGGGGCAGCGCTGGGAATGGGATGGGGTACGCTTCGCGACCTGGCGCTGGGATGCTGCCCGGCATAGCAACGATGCAT
CCTGCGTGCTGAGCGTGGAGGCCAACGGCGAACGCCTGCTGTTGACCGGCGACATCGAAGGTGCAGCGGGGCGCGCGCTG
CTGGATTCCGGCTTCGAGCTGCGCGCGCGCTGGTTCCAGGCGCCTCATCATGGCAGCCGCACTTCTTCTTCGGCGGCTCT
GCTGCGCCGGGTGATGCCTGAGGCGACACTGGTTTCGCGCGGCCGGCACAACAGCTTCGGGCATCCTCACCCGCTTGTAC
TGGCCCGTTACCGAAGCCTGGGTATCACCGTGCATGACACCGGCGAGCAGGGCGCCGTGAGCCTGCGCCTGGGGACTTTC
GGCGAAGCCCTTGGCGCGCGTGCTGAGCGTCGCTTCTGGCGAGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-679)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.598

97.551

0.62
  comA Ralstonia pseudosolanacearum GMI1000

34.762

100

0.397