Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   RRX38_RS24020 Genome accession   NZ_CP135971
Coordinates   5450507..5451181 (+) Length   224 a.a.
NCBI ID   WP_295474466.1    Uniprot ID   -
Organism   Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5445507..5456181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRX38_RS24000 (RRX38_24000) - 5445583..5446206 (+) 624 WP_315960946.1 glutathione S-transferase -
  RRX38_RS24005 (RRX38_24005) - 5446370..5447302 (+) 933 WP_295474474.1 ABC transporter ATP-binding protein -
  RRX38_RS24010 (RRX38_24010) - 5447299..5448087 (+) 789 WP_295474472.1 ABC transporter permease -
  RRX38_RS24015 (RRX38_24015) comA 5448228..5450435 (+) 2208 WP_315960947.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  RRX38_RS24020 (RRX38_24020) exbB 5450507..5451181 (+) 675 WP_295474466.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  RRX38_RS24025 (RRX38_24025) - 5451178..5451609 (+) 432 WP_295474463.1 ExbD/TolR family protein -
  RRX38_RS24030 (RRX38_24030) lpxK 5451609..5452604 (+) 996 WP_315960948.1 tetraacyldisaccharide 4'-kinase -
  RRX38_RS24035 (RRX38_24035) - 5452616..5452801 (+) 186 WP_295474456.1 Trm112 family protein -
  RRX38_RS24040 (RRX38_24040) kdsB 5452798..5453562 (+) 765 WP_315960949.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  RRX38_RS24045 (RRX38_24045) murB 5453562..5454581 (+) 1020 WP_315960950.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24171.42 Da        Isoelectric Point: 8.0759

>NTDB_id=887981 RRX38_RS24020 WP_295474466.1 5450507..5451181(+) (exbB) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIKENKLDSDKLKQLRADSPLGEILAAGLAN
SKHGREIMKESIEEAAARVIHELERYLAALGSIGAMAPLLGLLGTVLGMIDIFSSFNAAGNTGNAVVLAGGISKALICTA
SGLMVAIPAIFFHRYLQSRVDELVVGMEQQAIRLVEVVQGDREVDLVDAPVDLKSLAKTGGKRK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=887981 RRX38_RS24020 WP_295474466.1 5450507..5451181(+) (exbB) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTTCCAATCATTCTGAGCTCGATCGCCGCAGCCGGCATCATCAT
CGAGCGGCTGTGGACCTTGCGCGCCAGCAGGATCACGCCGCCACACCTGCTCGGGCAGGTCTGGCAGTGGATCAAGGAAA
ACAAACTCGACAGCGACAAACTCAAGCAGCTGCGCGCCGACTCGCCCTTGGGTGAAATCCTCGCCGCCGGCCTGGCCAAT
TCCAAGCATGGCCGGGAAATCATGAAGGAAAGCATCGAAGAGGCTGCCGCGCGGGTCATCCACGAGCTGGAGCGCTACCT
GGCGGCGCTGGGCTCGATCGGCGCGATGGCGCCGCTGCTCGGCCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCT
CGTCGTTCAACGCCGCCGGTAACACAGGCAATGCCGTGGTGCTCGCCGGAGGGATCTCCAAGGCGCTGATCTGTACCGCT
TCGGGGCTGATGGTGGCCATCCCGGCAATCTTCTTCCATCGCTACCTGCAGAGTCGTGTCGACGAGCTGGTGGTGGGCAT
GGAGCAGCAGGCCATCCGCCTGGTGGAAGTGGTGCAGGGCGACCGTGAGGTGGATCTGGTCGATGCGCCGGTTGACCTCA
AGTCGCTGGCCAAGACCGGGGGCAAGCGCAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.641

91.964

0.723