Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   RRX38_RS12580 Genome accession   NZ_CP135971
Coordinates   2960111..2961451 (+) Length   446 a.a.
NCBI ID   WP_315959481.1    Uniprot ID   A0AA96U600
Organism   Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2955111..2966451
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRX38_RS12555 (RRX38_12555) pgeF 2955261..2955992 (-) 732 WP_315959479.1 peptidoglycan editing factor PgeF -
  RRX38_RS12560 (RRX38_12560) rluD 2955989..2956951 (-) 963 WP_295473138.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RRX38_RS12565 (RRX38_12565) - 2957101..2958117 (+) 1017 WP_295473140.1 outer membrane protein assembly factor BamD -
  RRX38_RS12570 (RRX38_12570) - 2958284..2958526 (+) 243 WP_295473141.1 PP0621 family protein -
  RRX38_RS12575 (RRX38_12575) pilS 2958516..2960108 (+) 1593 WP_315959480.1 two-component system sensor histidine kinase NtrB Regulator
  RRX38_RS12580 (RRX38_12580) pilR 2960111..2961451 (+) 1341 WP_315959481.1 sigma-54 dependent transcriptional regulator Regulator
  RRX38_RS12585 (RRX38_12585) thiO 2961456..2962556 (-) 1101 WP_315959482.1 glycine oxidase ThiO -
  RRX38_RS12590 (RRX38_12590) - 2962589..2962999 (-) 411 WP_315959483.1 type IV pilin protein -
  RRX38_RS12595 (RRX38_12595) - 2963012..2966176 (-) 3165 WP_315959484.1 pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50281.69 Da        Isoelectric Point: 6.5086

>NTDB_id=887966 RRX38_RS12580 WP_315959481.1 2960111..2961451(+) (pilR) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
MTSRQKILIVDDEPDIRELLEITLGRMKLDTRAARNVAEAHDWLRREPFDLCLTDMRLPDGNGLELVQHIQQQHPQLPVA
MITAHGNLDLAINALKAGAFDFLTKPVDLTRLRELVGSALRLRSGTDQQHSIDSRLLGDAPPMRTLRKQISKLARSQAPI
YISGESGSGKELVARLIHEQGPRIDKPFVPVNCGAIPSELMESEFFGHRKGSFTGAHEDKPGLFQLADGGTLFLDEVADL
PLGMQVKLLRVIQEKAVRSIGGQQEQVVDVRLLCATHKDLAQEVSAGRFRQDLYYRLNVIELRVPPLRERREDIEPLAAS
MLQRLAASYAQPLARLHPQALETLKNYRFPGNVRELENMLERAYTLCEDDQILASDLRLADCSPTPEGDSPCLASIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=887966 RRX38_RS12580 WP_315959481.1 2960111..2961451(+) (pilR) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
ATGACTTCAAGGCAGAAGATCCTCATCGTTGACGATGAGCCGGACATCCGCGAACTCCTGGAAATTACCCTGGGCAGGAT
GAAACTCGACACCCGCGCCGCCCGCAACGTGGCCGAGGCTCACGACTGGCTCAGACGCGAGCCCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCGGACGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCAGCAGCACCCGCAGCTGCCAGTGGCG
ATGATCACCGCCCATGGCAACCTCGACCTGGCGATCAACGCCCTCAAGGCCGGCGCCTTCGACTTTCTCACCAAACCGGT
GGACCTCACCCGCCTGCGCGAGCTGGTTGGCAGCGCGCTACGCCTGCGCAGCGGCACCGACCAGCAGCACAGCATCGACA
GCCGCCTGCTGGGCGATGCCCCGCCGATGCGCACCCTGCGCAAGCAGATCAGCAAGCTGGCGCGCAGCCAGGCGCCGATT
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCACGCTTGATCCACGAACAGGGCCCGCGCATCGACAAGCC
CTTCGTACCGGTCAACTGCGGCGCCATTCCATCGGAACTGATGGAAAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTTA
CCGGTGCCCATGAAGACAAGCCCGGCCTGTTCCAGCTCGCCGACGGTGGCACGCTGTTCCTCGACGAAGTCGCCGACCTG
CCACTGGGCATGCAGGTCAAACTGCTGCGGGTCATCCAGGAGAAGGCCGTGCGCAGCATCGGCGGCCAGCAGGAGCAGGT
GGTGGACGTGCGCCTGCTGTGCGCCACCCACAAGGACCTGGCCCAGGAAGTCAGCGCCGGGCGTTTTCGCCAGGACCTCT
ACTACCGACTGAACGTCATCGAGCTGCGCGTGCCGCCCTTGCGCGAGCGCCGCGAAGACATCGAGCCCCTGGCCGCCAGC
ATGCTGCAGCGCCTGGCTGCCAGCTATGCACAGCCGTTGGCGCGCCTGCATCCACAAGCGCTGGAAACCCTGAAGAATTA
CCGCTTTCCGGGCAACGTGCGGGAGCTGGAGAACATGCTGGAGCGGGCCTACACCTTGTGCGAAGACGACCAGATCCTCG
CCAGCGACCTGCGTCTGGCCGACTGTTCGCCGACCCCGGAAGGCGACAGCCCCTGCCTGGCCAGCATCGATAACCTGGAG
GATTACCTGGAGAGCATCGAACGCAAGCTGATCCTCCAGGCCCTGGAGGAAACCCGCTGGAACCGCACCGCCGCCGCGCA
GCGGCTGAACCTGTCGTTCCGCTCGATGCGCTATCGGCTCAAGAAGCTGGGGCTGGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.73

99.552

0.794
  pilR Acinetobacter baumannii strain A118

47.93

100

0.493