Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   RRX38_RS12575 Genome accession   NZ_CP135971
Coordinates   2958516..2960108 (+) Length   530 a.a.
NCBI ID   WP_315959480.1    Uniprot ID   A0AA96U528
Organism   Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2953516..2965108
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RRX38_RS12555 (RRX38_12555) pgeF 2955261..2955992 (-) 732 WP_315959479.1 peptidoglycan editing factor PgeF -
  RRX38_RS12560 (RRX38_12560) rluD 2955989..2956951 (-) 963 WP_295473138.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  RRX38_RS12565 (RRX38_12565) - 2957101..2958117 (+) 1017 WP_295473140.1 outer membrane protein assembly factor BamD -
  RRX38_RS12570 (RRX38_12570) - 2958284..2958526 (+) 243 WP_295473141.1 PP0621 family protein -
  RRX38_RS12575 (RRX38_12575) pilS 2958516..2960108 (+) 1593 WP_315959480.1 two-component system sensor histidine kinase NtrB Regulator
  RRX38_RS12580 (RRX38_12580) pilR 2960111..2961451 (+) 1341 WP_315959481.1 sigma-54 dependent transcriptional regulator Regulator
  RRX38_RS12585 (RRX38_12585) thiO 2961456..2962556 (-) 1101 WP_315959482.1 glycine oxidase ThiO -
  RRX38_RS12590 (RRX38_12590) - 2962589..2962999 (-) 411 WP_315959483.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58561.76 Da        Isoelectric Point: 6.9402

>NTDB_id=887965 RRX38_RS12575 WP_315959480.1 2958516..2960108(+) (pilS) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
MSVEPLSLNSPLAQRILRLYHLYRLIIGIMLVLLVSSDMDVELLDMSNPGLFRAGCWIYLVTNILVVVLLERPRHKALMF
SLALSDAILLSGLFYAGGGTASGIGNLLIASVAISNILLRGRVGLSIAAVSAIGIIYLTFYLSFDNPKVANDYVQAGSLG
ALCFAVALLMQALTARLRLSEVLAEQRAVDVDNLEELNGLILQRMRTGILVLDANRRILLINQAAHALLGHERLNGEVLD
DYCPALVERLRHWRMNPVRITESLRTSPAGPVLQASFATLNRHDQQQTLVFLEDLSQVALQAQQLKLAALGRLTAGIAHE
IRNPLGAIGHAVQLLEESEELSTPDRRLAQIIHDQSRRINVVIENVLQLSRRREAAPQQLNLAAWLEDFVSQWRASAPPR
HQLHCEIGDGALSTRMDPEHLTQVLTNLVHNGLRHSGQVHEQAQVWLRLYHQPGSHLPVLDVLDDGAGVSEQHLGKMFEP
FFTTETKGTGLGLYLSRELCASNQAHLDYALRPEGGSCLRITFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=887965 RRX38_RS12575 WP_315959480.1 2958516..2960108(+) (pilS) [Pseudomonas sp. DTU_2021_1001937_2_SI_NGA_ILE_001]
GTGAGCGTTGAGCCACTGTCCCTCAACAGCCCCCTGGCCCAGCGCATCCTGCGGCTCTACCACCTCTACCGGCTGATCAT
CGGCATCATGCTGGTGCTGCTGGTGTCCAGCGACATGGATGTCGAACTGCTGGACATGAGCAATCCCGGCCTGTTCCGCG
CCGGCTGCTGGATCTACCTGGTCACCAACATCCTGGTGGTGGTGCTGCTCGAGCGCCCCCGGCACAAGGCCCTGATGTTC
AGCCTGGCGCTGAGCGATGCGATCCTGCTGTCGGGGCTGTTCTATGCCGGCGGCGGCACTGCCAGCGGCATCGGCAACCT
GCTGATCGCCTCGGTGGCAATTAGCAATATCCTGTTGCGCGGGCGGGTCGGTCTGTCGATTGCCGCCGTGTCGGCCATCG
GCATCATCTACCTGACCTTCTACCTCAGCTTCGACAACCCCAAGGTCGCCAATGACTACGTGCAAGCCGGCAGCCTGGGC
GCCCTGTGCTTCGCCGTCGCCTTGCTGATGCAGGCGTTGACCGCACGCTTGCGCCTGAGCGAGGTCCTGGCCGAGCAACG
CGCCGTGGATGTGGATAACCTCGAAGAACTCAACGGCCTGATCCTGCAGCGCATGCGCACCGGCATTCTGGTACTGGATG
CCAACCGACGCATTCTGCTGATCAACCAGGCCGCCCATGCGCTGCTAGGCCACGAGCGTCTGAACGGCGAAGTTCTGGAT
GACTACTGCCCGGCCCTGGTCGAGCGCCTCAGGCACTGGCGCATGAACCCGGTGCGGATCACCGAGAGCTTGCGCACCTC
TCCCGCCGGGCCGGTGCTGCAGGCCAGCTTCGCCACCCTGAACCGCCACGACCAGCAACAGACCCTGGTGTTTCTCGAAG
ACCTCTCGCAGGTCGCCTTGCAGGCCCAGCAGCTCAAGCTGGCGGCGCTGGGGCGGCTGACCGCCGGCATCGCCCATGAA
ATCCGCAACCCGCTGGGCGCCATCGGCCACGCGGTGCAACTGCTGGAAGAATCGGAAGAACTCAGTACGCCCGACCGGCG
TCTGGCGCAGATCATCCATGACCAGTCACGGCGCATCAACGTGGTGATCGAAAACGTCCTGCAGCTGTCGCGCCGCCGCG
AAGCCGCGCCACAACAGTTGAACCTCGCTGCCTGGCTGGAAGACTTCGTCAGCCAGTGGCGCGCCAGCGCGCCGCCCCGG
CACCAGTTGCACTGCGAGATCGGCGACGGAGCGCTGAGCACGCGCATGGACCCCGAGCACCTGACCCAGGTGCTGACCAA
CCTGGTGCATAACGGTCTGCGCCACAGCGGCCAGGTGCATGAGCAGGCGCAGGTCTGGTTGCGGCTTTATCACCAGCCAG
GCAGCCACTTGCCGGTTCTAGATGTACTCGATGATGGTGCCGGGGTCTCCGAGCAGCACCTGGGCAAAATGTTCGAGCCC
TTTTTCACCACCGAAACCAAAGGCACGGGGCTGGGTCTGTACCTGTCCCGTGAGCTGTGTGCCAGCAACCAGGCGCATCT
GGACTATGCCCTGCGGCCCGAAGGCGGCAGTTGCCTGCGCATTACCTTCGCCCACCCGTTCAAGTTGAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(203-251)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.811

100

0.598