Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   RS960_RS07460 Genome accession   NZ_CP135966
Coordinates   1536258..1536704 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus strain ST5477     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1531258..1541704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RS960_RS07430 (RS960_07430) gcvPA 1532184..1533530 (-) 1347 WP_115305438.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  RS960_RS07435 (RS960_07435) gcvT 1533550..1534641 (-) 1092 WP_262538681.1 glycine cleavage system aminomethyltransferase GcvT -
  RS960_RS07440 (RS960_07440) - 1534800..1535324 (-) 525 WP_001015120.1 shikimate kinase -
  RS960_RS07445 (RS960_07445) - 1535314..1535460 (-) 147 WP_001789879.1 hypothetical protein -
  RS960_RS07450 (RS960_07450) comGF 1535557..1536054 (-) 498 WP_258411170.1 competence type IV pilus minor pilin ComGF Machinery gene
  RS960_RS07455 (RS960_07455) comGE 1535972..1536271 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  RS960_RS07460 (RS960_07460) comGD 1536258..1536704 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  RS960_RS07465 (RS960_07465) comGC 1536682..1536993 (-) 312 WP_262538680.1 competence type IV pilus major pilin ComGC Machinery gene
  RS960_RS07470 (RS960_07470) comGB 1537007..1538077 (-) 1071 WP_262538679.1 competence type IV pilus assembly protein ComGB Machinery gene
  RS960_RS07475 (RS960_07475) comGA 1538049..1539011 (-) 963 WP_317528597.1 competence type IV pilus ATPase ComGA Machinery gene
  RS960_RS07480 (RS960_07480) - 1539063..1539686 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  RS960_RS07485 (RS960_07485) - 1539683..1540012 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  RS960_RS07490 (RS960_07490) - 1540012..1540998 (-) 987 WP_000161315.1 ROK family glucokinase -
  RS960_RS07495 (RS960_07495) - 1540995..1541198 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=887883 RS960_RS07460 WP_001796473.1 1536258..1536704(-) (comGD) [Staphylococcus aureus strain ST5477]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=887883 RS960_RS07460 WP_001796473.1 1536258..1536704(-) (comGD) [Staphylococcus aureus strain ST5477]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993