Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   RUL31_RS18305 Genome accession   NZ_CP135964
Coordinates   3706855..3707544 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus atrophaeus strain CD303     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3701855..3712544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS18270 (RUL31_18270) - 3702034..3702516 (-) 483 WP_315915992.1 flagellar protein FlgN -
  RUL31_RS18275 (RUL31_18275) flgM 3702532..3702792 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  RUL31_RS18280 (RUL31_18280) - 3702872..3703291 (-) 420 WP_315915994.1 TIGR03826 family flagellar region protein -
  RUL31_RS18285 (RUL31_18285) comFC 3703363..3704085 (-) 723 WP_390840846.1 double zinc ribbon domain-containing protein Machinery gene
  RUL31_RS18290 (RUL31_18290) - 3704049..3704345 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  RUL31_RS18295 (RUL31_18295) comFA 3704402..3705799 (-) 1398 WP_315915995.1 ATP-dependent helicase ComFA Machinery gene
  RUL31_RS18300 (RUL31_18300) - 3705906..3706748 (-) 843 WP_003326716.1 DegV family protein -
  RUL31_RS18305 (RUL31_18305) degU 3706855..3707544 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RUL31_RS18310 (RUL31_18310) degS 3707621..3708784 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator
  RUL31_RS18315 (RUL31_18315) - 3709002..3709655 (+) 654 WP_003326713.1 YigZ family protein -
  RUL31_RS18320 (RUL31_18320) - 3709655..3710878 (+) 1224 WP_315916036.1 LCP family protein -
  RUL31_RS18325 (RUL31_18325) - 3710969..3712045 (-) 1077 WP_063638078.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=887852 RUL31_RS18305 WP_003219701.1 3706855..3707544(-) (degU) [Bacillus atrophaeus strain CD303]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=887852 RUL31_RS18305 WP_003219701.1 3706855..3707544(-) (degU) [Bacillus atrophaeus strain CD303]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAATTATTTCGTGAAGGTGTTAAGCGAATATTAGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCAGCTCGTATTGTTGAGCACTATCATCCTGACGTAGTCA
TTATGGATATTAATATGCCGAATGTAAATGGTGTGGAAGCTACTAAGCAGCTTGTAGAGCTGTATCCAGAATCAAAAGTA
ATTATCTTGTCTATTCATGATGATGAAAATTATGTGACACATGCCTTAAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
AATGGACGCTGATACTTTAATCGAAGCAGTTAAAGTGGTGGCGGAAGGCGGTTCATATCTCCATCCGAAGGTCACTCACA
ATCTTGTAAACGAGTTTCGACGTCTTGCAACAAGCGGAGTTTCTGCCCATCCTCAGCATGAGGTTTATCCGGAAATTCGG
AGACCGTTACATATTCTAACCAGGCGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGTAAAAGCAACCGCGGTATAGG
CGAATCACTATTTATCAGTGAAAAAACAGTCAAAAATCATGTCAGCAATATTTTGCAAAAAATGAACGTAAACGATCGGA
CGCAAGCAGTTGTGGTCGCGATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1