Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   RUL31_RS18285 Genome accession   NZ_CP135964
Coordinates   3703363..3704085 (-) Length   240 a.a.
NCBI ID   WP_390840846.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3698363..3709085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS18250 (RUL31_18250) fliW 3698506..3698937 (-) 432 WP_315915991.1 flagellar assembly protein FliW -
  RUL31_RS18255 (RUL31_18255) - 3698972..3699538 (-) 567 WP_315917088.1 DUF6470 family protein -
  RUL31_RS18260 (RUL31_18260) flgL 3699586..3700482 (-) 897 WP_088118067.1 flagellar hook-associated protein FlgL -
  RUL31_RS18265 (RUL31_18265) flgK 3700494..3702017 (-) 1524 WP_010790079.1 flagellar hook-associated protein FlgK -
  RUL31_RS18270 (RUL31_18270) - 3702034..3702516 (-) 483 WP_315915992.1 flagellar protein FlgN -
  RUL31_RS18275 (RUL31_18275) flgM 3702532..3702792 (-) 261 WP_003326722.1 flagellar biosynthesis anti-sigma factor FlgM -
  RUL31_RS18280 (RUL31_18280) - 3702872..3703291 (-) 420 WP_315915994.1 TIGR03826 family flagellar region protein -
  RUL31_RS18285 (RUL31_18285) comFC 3703363..3704085 (-) 723 WP_390840846.1 double zinc ribbon domain-containing protein Machinery gene
  RUL31_RS18290 (RUL31_18290) - 3704049..3704345 (-) 297 WP_003326719.1 late competence development ComFB family protein -
  RUL31_RS18295 (RUL31_18295) comFA 3704402..3705799 (-) 1398 WP_315915995.1 ATP-dependent helicase ComFA Machinery gene
  RUL31_RS18300 (RUL31_18300) - 3705906..3706748 (-) 843 WP_003326716.1 DegV family protein -
  RUL31_RS18305 (RUL31_18305) degU 3706855..3707544 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  RUL31_RS18310 (RUL31_18310) degS 3707621..3708784 (-) 1164 WP_003326714.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27550.75 Da        Isoelectric Point: 8.5583

>NTDB_id=887850 RUL31_RS18285 WP_390840846.1 3703363..3704085(-) (comFC) [Bacillus atrophaeus strain CD303]
MCDEKKRGAKKLNCLLCDSQFSQSLTWRSLFLLEPDEKVCHPCKRQLQRIAGTVCPSCGRPQNTNEKCPDCTEWESRIDR
GFLLSRNRSVYLYNEMMKESLARFKFRGDAELLHVFKTDFVSEFSTVYPEKSYVLIPIPLSEERKAERGFNQSELLAKCL
DRPIIHSLTRLDNEKQSKKNKAERLLFKRVFDTEINSVGGMDVILIDDLYTTGATLHHAARCLLEKGKAGSVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=887850 RUL31_RS18285 WP_390840846.1 3703363..3704085(-) (comFC) [Bacillus atrophaeus strain CD303]
TTGTGTGACGAAAAAAAGAGAGGAGCAAAAAAGCTGAACTGCTTATTGTGTGATTCGCAGTTTTCTCAATCTCTTACGTG
GAGATCTTTATTTTTATTAGAGCCGGACGAAAAGGTCTGTCATCCGTGCAAAAGACAATTACAAAGGATCGCAGGAACGG
TTTGCCCTTCATGCGGCAGACCTCAAAACACAAATGAAAAATGCCCCGATTGCACCGAATGGGAATCAAGGATTGATAGA
GGCTTCCTTTTAAGCCGAAACCGTTCTGTTTATTTATATAATGAGATGATGAAAGAATCGCTGGCCCGTTTTAAATTCAG
AGGAGACGCAGAGCTTTTGCATGTTTTTAAGACTGATTTTGTATCGGAATTTTCAACTGTCTATCCTGAAAAAAGCTATG
TGCTCATTCCAATCCCGCTGAGTGAGGAACGGAAAGCAGAGCGCGGGTTTAACCAGTCAGAGCTTCTGGCGAAATGTTTA
GACCGGCCCATCATTCATTCCCTAACCCGTCTGGATAATGAAAAACAATCCAAGAAAAACAAAGCAGAACGGCTCCTTTT
CAAACGTGTTTTTGATACTGAAATCAATTCCGTTGGAGGTATGGATGTCATATTAATCGACGATCTTTATACCACTGGCG
CTACCTTACACCATGCAGCCCGCTGTTTATTGGAAAAAGGAAAAGCAGGCTCTGTGTCCTCTTTTACTTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(13-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.667