Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   RUL31_RS16445 Genome accession   NZ_CP135964
Coordinates   3336982..3337125 (-) Length   47 a.a.
NCBI ID   WP_003327149.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain CD303     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3331982..3342125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RUL31_RS16420 (RUL31_16420) - 3332333..3332713 (-) 381 WP_010789785.1 hotdog fold thioesterase -
  RUL31_RS16425 (RUL31_16425) comA 3332731..3333372 (-) 642 WP_003327154.1 response regulator transcription factor Regulator
  RUL31_RS16430 (RUL31_16430) comP 3333453..3335750 (-) 2298 WP_277713830.1 histidine kinase Regulator
  RUL31_RS16435 (RUL31_16435) comX 3335761..3335925 (-) 165 WP_106046982.1 competence pheromone ComX -
  RUL31_RS16440 (RUL31_16440) - 3335938..3336798 (-) 861 WP_216412504.1 polyprenyl synthetase family protein -
  RUL31_RS16445 (RUL31_16445) degQ 3336982..3337125 (-) 144 WP_003327149.1 degradation enzyme regulation protein DegQ Regulator
  RUL31_RS16450 (RUL31_16450) - 3337585..3337944 (+) 360 WP_315915881.1 hypothetical protein -
  RUL31_RS16455 (RUL31_16455) - 3337963..3339195 (-) 1233 WP_003327147.1 EAL and HDOD domain-containing protein -
  RUL31_RS16460 (RUL31_16460) - 3339333..3340799 (-) 1467 WP_106359954.1 nicotinate phosphoribosyltransferase -
  RUL31_RS16465 (RUL31_16465) - 3340815..3341366 (-) 552 WP_315915882.1 isochorismatase family cysteine hydrolase -
  RUL31_RS16470 (RUL31_16470) - 3341474..3341872 (-) 399 WP_003327144.1 YueI family protein -

Sequence

Protein


Download         Length: 47 a.a.        Molecular weight: 5645.61 Da        Isoelectric Point: 8.5787

>NTDB_id=887847 RUL31_RS16445 WP_003327149.1 3336982..3337125(-) (degQ) [Bacillus atrophaeus strain CD303]
MEKKKLEEVKQLLFRLELDIKETTDSLRNINKSIDQLDKFTYAMKIS

Nucleotide


Download         Length: 144 bp        

>NTDB_id=887847 RUL31_RS16445 WP_003327149.1 3336982..3337125(-) (degQ) [Bacillus atrophaeus strain CD303]
GTGGAAAAGAAAAAACTTGAAGAAGTGAAACAATTATTATTCCGACTCGAACTTGATATCAAAGAAACGACAGATTCATT
ACGAAACATTAACAAAAGCATTGATCAGCTCGATAAATTCACATATGCAATGAAAATTTCGTGA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

95.455

93.617

0.894